Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium199g00003 ATGATCAATAGTATAAAAGAAGCAGATTTTCCACTGAAACAGGAAGGCGTTTCTTCAAGTGATCATGAAAAGGCAAAGGCTTCATCGAGTTCATCTTCTCAGTGGCTGAAACTGAAGGATCCAAGGATTGTTCGTGTGTCTCGAGCCTTTGGAGGAAAAGACAGGCACAGCAAAGTGTGCACAGTAAGAGGGCTAAGAGATAGGAGAGTGAGGCTTTCAGTGCCAACAGCAATTCATCTCTACGACCTCCAAGATAGGCTTGGACTGAATCAACCCAGCAAGGTTGTTGATTGGTTGCTGAATGCAGCAAAGCACGAAATTGATGAACTTCCGCCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCATCTCTTGTTGCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACAAACACTTTGTGGAAATCAAAGTCAGGAGAAATGGTTAGTGATAAAGCAAATTGGATAAACAGAAATGAAGAAGATAACAGTAATAATAATAATAATACTAATACTGCTGGTGATTGTGATAATAAACACTGTCATGGTGCACATGTTTTTTCAAATAATCTCTTGCCAAGACCAAACCATCCTTCATTTTTGGGGTTGATGAACACCATGCCATCACTTGGTTACCAATGGGAGACTAATTCAGGTGATGTTGCTCAATGGGCAAACCATGGATTTGTTAATCAAACAGATATACACAGCATTAATGTAGTTCCAATCCCCTCAACTTTGGCTCTATCAACTGGGAATACTACTACTCCTCAGATTTTGGTGTGTCCTTCTGGAGCAACACAGCCATATTTCCCTTCACATGTTGCAGCAATGGAGATGAATGCGAGACAACTCAACCACTATCAGATGCTGACTTCAGGATCTCAAAATCTCTTCGCAAATTCATCTCAACAACTCATGAGCCAATCTGGGAAAGTGCCGTTCAGCTTGGTTAGGCCTAAACTTTTCCATTCTCCTAACAGCAGTGAAAGTCATTCTCGTAAAGACCAGGATTTTCCTTCCAAGTGA 1050 0.4162 MINSIKEADFPLKQEGVSSSDHEKAKASSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVACNEVSTSREGSGQNTNTLWKSKSGEMVSDKANWINRNEEDNSNNNNNTNTAGDCDNKHCHGAHVFSNNLLPRPNHPSFLGLMNTMPSLGYQWETNSGDVAQWANHGFVNQTDIHSINVVPIPSTLALSTGNTTTPQILVCPSGATQPYFPSHVAAMEMNARQLNHYQMLTSGSQNLFANSSQQLMSQSGKVPFSLVRPKLFHSPNSSESHSRKDQDFPSK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium199g00003 349 MobiDBLite consensus disorder prediction 335 349 - -
Vium199g00003 349 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Vium199g00003 349 Pfam TCP family transcription factor 52 178 IPR017887 -
Vium199g00003 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 316 IPR005333 GO:0003700
Vium199g00003 349 MobiDBLite consensus disorder prediction 1 33 - -
Vium199g00003 349 MobiDBLite consensus disorder prediction 328 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium199g00003 Vium-Chr199 22987 25416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium199g00003 35 297 TCP Transcription Factor Family AT3G02150 42.599 3.15e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium199g00003 TCP 3.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium199g00003 - - aprc:113867214 499.59