Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1991g00003 ATGGCACCCGAAGTCATCAGAGGAGAACTGTCAAACGAAAAGTGTGATGTATTCAGCTTTGGTGTAATTTTGTGGGAACTAGTCACCCTCCAACAACCATGGAGACATTTAAATCCTTCACAGGTTGTTGCGGCTGTTGGTTTTATGGACAAAAGGCTAGATATTCCAAGGCATGTGAATCCTGAAGTTGCAGCCTTGATTGAACTCTCCTGGGCCACGGAACCCTGGAGACGGCCTTCTTTCTCCTATATTATGAAATGTTTGCAGCAAATAATTGCTGATGCTAGAGGGTGA 294 0.4456 MAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRHLNPSQVVAAVGFMDKRLDIPRHVNPEVAALIELSWATEPWRRPSFSYIMKCLQQIIADARG 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1991g00003 97 Pfam Protein tyrosine and serine/threonine kinase 1 88 IPR001245 GO:0004672|GO:0006468
Vium1991g00003 97 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 91 - -
Vium1991g00003 97 SUPERFAMILY Protein kinase-like (PK-like) 1 88 IPR011009 -
Vium1991g00003 97 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Vium1991g00003 97 ProSiteProfiles Protein kinase domain profile. 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1991g00003 Vium-Chr1991 32211 41310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1991g00003 1 95 MAP Kinase Kinase Kinase AT5G03730 68.421 7.36e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium1991g00003 PK_Tyr_Ser-Thr 4.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1991g00003 K14510 - pvu:PHAVU_007G245400g 202.986