Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1991g00002 ATGTATAGTGATGCTGAGTCCGAATCTGAATCTGAACGCAACAGAATGAGTTCTGGCGCCGATGAAGAAGAACAAGGTTCCTTCAAGAGCTTGGCCAAGCAAACGGAGCAGAGTTACCAGTTGCAGCTCGCACTCGCGCTTCGTCTCTCTTCTCATGCTTCTTCTTCGTCCGATCACTCTTCCTCTCCGACTCAGACGTTATCACACCGTTTCTGGGTGGATGGTTGTTTGCAATACTCTGACAAAATTTTAGATGGCTTTTACTTAATCCATGGGATGGATGCATATACATGGACTCTAAGTACTGATTTGCAGAATGTTGGTATTATTCCATCATTTGAATCACTCATGTCAGTTGAACCCAGTGACGACTCATCAATTGTTGTGGTTGCTGTTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAACAGGGTTGCAAGTCTTTCAAATAACTGGATTACCACTAAAGATGCAACTGATCAGCTTGCAAGTCTTATTTGCAATAGGATGGGGGGAGGGTCTTTAACTGAGGAAAATTTAGTTATACGCTGGAAGGAATGCACCCAACTTCTTAAAAGCTGCATGCACTCTGTCATTCTTCCAATTGGAAGCTTACCCATTGGCCTTTGTGTCCATCGAGCGTTGCTGTTTAAAGTGTTGGCTGACTTAATCAATCTACCATGCCGTATTGCAAAGGGCTGCAAGTATTGCAGAAATGATGTGGGAGCGTCATGCATAGTTCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAATTGGAAGGCCTGGGGCAACATGTCAACCTGATTCTTTTCTGAATTCTGCTTCTTCAATGTTGGTTGCTTCACCATTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACACTTGCTCAATTGTATTTCTTGGACAGTCAAGCACTGCATCTTGTATTTGATACTACATCAGGACCTGCTGTTAATCACAGTGACACAATGGATCTGCAGCGAACCGAAGCTTTGGGTGCAAATTATGCCGGTGGAAACAGCCATCTGATTGCTTTGATTCCTGGTGCAGAGGAGTATGCGTATTTCAATGAAGTAGACCAGACAGTCTTGGATTATCCAAGTCATGAAGTTGATCTTGACGAGGAGGATCTGGATATTCCTTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGATGTTGCAGTGAAAATTCTTAAAGTGCAAGGTTTTGATCCTGGGCGATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTACGGCATCCAAATATTGTACTCTTGATGGGTGCAGTTATTCAACCCCCTAAGTTATCAATTGTAACAGAGTATTTATCTAGAGGCAGTTTGTATGAACTTCTGCACATGCCCAATGTTGGATCATCACTTAGTGAGAGGTGTCGCTTAAAAATGGCTTATGATGTGGCAAGCGGAATGAATTATCTTCATCAAATGAGACCCCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGTCTTTCACGCACAAAGGCAAACACATTTCTTTCTTCTAAAACCGCAGCTGGGACTCCTGAATGGATGGCACCCGAAGTCATCAGAGGAGAACTGTCAAACGAAAAGTGTGATGTATTCAGCTTTGGTGTAATTTTGTGGGAACTAGTCACCCTTCAACAACCATGGAGACATTTAAATCCTTCACAGGTTATTTGCTTCTCCCCAGTGCTTTTGATTTAG 1836 0.4248 MYSDAESESESERNRMSSGADEEEQGSFKSLAKQTEQSYQLQLALALRLSSHASSSSDHSSSPTQTLSHRFWVDGCLQYSDKILDGFYLIHGMDAYTWTLSTDLQNVGIIPSFESLMSVEPSDDSSIVVVAVDKSRDPGLRELQNRVASLSNNWITTKDATDQLASLICNRMGGGSLTEENLVIRWKECTQLLKSCMHSVILPIGSLPIGLCVHRALLFKVLADLINLPCRIAKGCKYCRNDVGASCIVQFGSDREYMIDLIGRPGATCQPDSFLNSASSMLVASPLCHPKFKPVETAEYTKTLAQLYFLDSQALHLVFDTTSGPAVNHSDTMDLQRTEALGANYAGGNSHLIALIPGAEEYAYFNEVDQTVLDYPSHEVDLDEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDPGRFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSERCRLKMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRHLNPSQVICFSPVLLI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1991g00002 611 Gene3D Transferase(Phosphotransferase) domain 1 473 606 - -
Vium1991g00002 611 MobiDBLite consensus disorder prediction 1 33 - -
Vium1991g00002 611 Pfam Ethylene-responsive protein kinase Le-CTR1 64 267 - -
Vium1991g00002 611 SUPERFAMILY Protein kinase-like (PK-like) 378 603 IPR011009 -
Vium1991g00002 611 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 62 602 - -
Vium1991g00002 611 PRINTS Tyrosine kinase catalytic domain signature 556 566 IPR001245 GO:0004672|GO:0006468
Vium1991g00002 611 PRINTS Tyrosine kinase catalytic domain signature 575 597 IPR001245 GO:0004672|GO:0006468
Vium1991g00002 611 PRINTS Tyrosine kinase catalytic domain signature 468 481 IPR001245 GO:0004672|GO:0006468
Vium1991g00002 611 PRINTS Tyrosine kinase catalytic domain signature 509 527 IPR001245 GO:0004672|GO:0006468
Vium1991g00002 611 Gene3D Phosphorylase Kinase; domain 1 387 472 - -
Vium1991g00002 611 ProSitePatterns Protein kinases ATP-binding region signature. 400 421 IPR017441 GO:0005524
Vium1991g00002 611 MobiDBLite consensus disorder prediction 1 29 - -
Vium1991g00002 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Vium1991g00002 611 SMART serkin_6 394 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1991g00002 611 FunFam Serine/threonine-protein kinase isoform 1 384 472 - -
Vium1991g00002 611 Pfam Protein tyrosine and serine/threonine kinase 395 603 IPR001245 GO:0004672|GO:0006468
Vium1991g00002 611 CDD STKc_MAP3K-like 400 603 - -
Vium1991g00002 611 ProSiteProfiles Protein kinase domain profile. 394 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1991g00002 Vium-Chr1991 11717 27989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1991g00002 32 604 MAP Kinase Kinase Kinase AT5G03730 57.737 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium1991g00002 PK_Tyr_Ser-Thr 3.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1991g00002 K14510 - gmx:100807496 1066.99