Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium198g00003 ATGAAGATCCAATGCGACGTCTGTGACAAACACGATGCATCCGTCTTTTGTACCGCCGATGAAGCCGTCCTCTGCGACGGCTGCGACCACCGCATCCACCACGCCAACAAACTAGCCTCCAAACACCAGCGTTTCTCTCTTCTTCGACCCAAACAACACCCTCTATGCGATGTTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTGTGCAGAGAGTGTGACGTGTCGATTCACTCTGCGAATGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTTAAACTTTCTGCTTCTTCTTCATCGCAAGAAACCCCTTCTCCTTCAAACTCCGCCCCTGATTCTCCTTTTGAGCTTTCGCATCAAAAAACAACACCTTTATCTTCCACCGTCAGTGAGGTTGGTGTTGAAGCGGCGGCTTCCACCGGCGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTCTGCAAGAGTGATGAAGTGTTGCCACGGTTTGATGGTGACATGGAGAGTCATCTGGGTACCTTTTCAACAGAGAACGTGGGAATATGGGTTCCTCAAGCGCCGCCACCTCTTCTGAGTTTTTCACAGATGAATGGAGCGATTGGTCAAAACGAAAACAACATCAAAGGTAGCAGATCGAGGTTGAAGGATGATAATTTCACTGTGCCACAGATTAGTCCTCAGTCAAATTCCAAGAGAGGAAGGTTTCTGTGGTAG 795 0.4843 MKIQCDVCDKHDASVFCTADEAVLCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSANEHTLKHDRFLLTGVKLSASSSSQETPSPSNSAPDSPFELSHQKTTPLSSTVSEVGVEAAASTGASSISEYLIETLPGWQVEDFLDSYSVPFGFCKSDEVLPRFDGDMESHLGTFSTENVGIWVPQAPPPLLSFSQMNGAIGQNENNIKGSRSRLKDDNFTVPQISPQSNSKRGRFLW 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium198g00003 264 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vium198g00003 264 CDD Bbox1_BBX-like 5 47 - -
Vium198g00003 264 MobiDBLite consensus disorder prediction 107 138 - -
Vium198g00003 264 CDD Bbox1_BBX-like 55 98 - -
Vium198g00003 264 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium198g00003 264 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 257 - -
Vium198g00003 264 FunFam B-box zinc finger protein 21 1 96 - -
Vium198g00003 264 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vium198g00003 264 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium198g00003 264 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Vium198g00003 264 MobiDBLite consensus disorder prediction 243 264 - -
Vium198g00003 264 Gene3D Classic Zinc Finger 1 93 - -
Vium198g00003 264 MobiDBLite consensus disorder prediction 236 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium198g00003 Vium-Chr198 26074 27887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium198g00003 1 264 C2C2-CO-like Transcription Factor Family AT1G75540 42.985 5.93e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium198g00003 zf-B_box 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium198g00003 - - gmx:100807827 418.698