Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium198g00001 ATGAAGATCCAATGTGACGTCTGTGACAAACACCATGCATCCGTCTTTTGTACCGCCGATGAAGCCGTCCTCTGCGACGGCTGCGACCACTGCATCCACCACGCCAACAAACTAGCTTTCAAACACCAGCGTTTCTCTCTTCTTCGACCCAGACAACACCCTCTCTGCGATGTTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTGTGCAGAGAGTGTGACGTGTCGATTCACTCTGCGAATGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTTAAACTTTCTGCTTCTTCTTCATCGCAAGAAACCCCTTCTCCTTCAAACTCCGCCCCTGATTCTCTTTTTGACCTTTCGCATCAAAAAACAATACCTTTATCTTCCACCGTCAGTGAGGTTGGTGTTGAAGCGGCGGCTTCCACCGGCGCTAGCAGCATATCGGAGTATTTGACAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTTGATTCGTATTCTGTTCCCTATGGTTTCTGGAAGGTCTGCACTTTCTTCTTTTTTCTCTTCTTTCAATTGTTGAAATCAATTGATTCATCTATTCTCTTGCATTGA 618 0.4709 MKIQCDVCDKHHASVFCTADEAVLCDGCDHCIHHANKLAFKHQRFSLLRPRQHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSANEHTLKHDRFLLTGVKLSASSSSQETPSPSNSAPDSLFDLSHQKTIPLSSTVSEVGVEAAASTGASSISEYLTETLPGWQVEDFLDSYSVPYGFWKVCTFFFFLFFQLLKSIDSSILLH 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium198g00001 205 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vium198g00001 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium198g00001 205 CDD Bbox1_BBX-like 5 47 - -
Vium198g00001 205 Gene3D Classic Zinc Finger 1 93 - -
Vium198g00001 205 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Vium198g00001 205 CDD Bbox1_BBX-like 55 98 - -
Vium198g00001 205 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vium198g00001 205 FunFam B-box zinc finger protein 21 1 96 - -
Vium198g00001 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium198g00001 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium198g00001 Vium-Chr198 13542 14494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium198g00001 1 182 C2C2-CO-like Transcription Factor Family AT1G75540 55.769 3.68e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium198g00001 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium198g00001 - - gmx:100807827 283.878