Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1989g00014 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCACCCACTAAGGTGAAGGAGGAGATCAACGTTGATGGCTACGAAGGCTCTGGATTCACAAAGGGTTCCATTGCACAGTGGCCTTTCTCGAACAAAGTATCCGCAATTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTATCTTAAGTCAAGATGCAATTGAGTCTAGTCACAAACGCTCTGCCGGTGACACCCAGAAATCTTTCAATCACGATGGGCAAGGTGGTCATCATTTTTCGCTGACTCAACATGATGTGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCGGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCAACTGGTGGCCAGAATATGAATCGCACCAGTGTAAAGCAGTCATTCCTTGGGGGAATACCTGTTTCTGTGCCCCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGGTTGAACCATGTATGAAACCATCTCCGCCTTCTGCCCAACTTACCATCTTCTATGGGGGAACTGTCAAAGTCTTTGATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGCAGTAGCGTATCTGTAGCTCATAGCATGGTCCAGCCAAAAGTTCACGTGCCGGTCTCGAAGATGGCTGCTGGCGACAGTGTGCCTGCGACTCAGCCTGCAAATACGCCACCCGGCTCTGGCCTTTCGAGCCCTATATCTGTTTCTTCACATACTGGAACACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCGAAAACAACTGGAGTTCCCACCACTCTTGTTAGCAATGTGGACCCTCCAAAGGTAGTCAGTGCAGCCACTATGTTGACATCAGCTGTACCTCAGGCTAGGAAAGCATCCTTGGCTAGATTTTTAGAAAAACGCAAAGAAAGGGTGACGAGTGCAGCACCATACAACCTTAACAGGAAGTCTGAAGAGTGTGGCCCTGCAGAATTTGGTGGTGCCATGTTTTCTGCAGGTGCTGCGACCAGTACTGTTTCGGCAATGCAAGGATAG 1146 0.4695 MERDFMGLNSKEPPTKVKEEINVDGYEGSGFTKGSIAQWPFSNKVSAIPHLMSFKASQDDKTKKMLSGPITAGLLSILSQDAIESSHKRSAGDTQKSFNHDGQGGHHFSLTQHDVNSVHRPHDVKMFSVPNQAISVSMGNPFLNNHFATGGQNMNRTSVKQSFLGGIPVSVPHLVIPNAGAVAGMVEPCMKPSPPSAQLTIFYGGTVKVFDDISAEKAQAIMLLAGSSVSVAHSMVQPKVHVPVSKMAAGDSVPATQPANTPPGSGLSSPISVSSHTGTQSGSGSTSTDEFLAAKTTGVPTTLVSNVDPPKVVSAATMLTSAVPQARKASLARFLEKRKERVTSAAPYNLNRKSEECGPAEFGGAMFSAGAATSTVSAMQG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1989g00014 381 ProSiteProfiles Tify domain profile. 192 227 IPR010399 -
Vium1989g00014 381 Pfam tify domain 193 226 IPR010399 -
Vium1989g00014 381 MobiDBLite consensus disorder prediction 85 110 - -
Vium1989g00014 381 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 123 354 IPR040390 -
Vium1989g00014 381 MobiDBLite consensus disorder prediction 254 289 - -
Vium1989g00014 381 Pfam Jas motif 324 348 IPR018467 -
Vium1989g00014 381 SMART tify_2 192 227 IPR010399 -
Vium1989g00014 381 MobiDBLite consensus disorder prediction 250 289 - -
Vium1989g00014 381 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1989g00014 Vium-Chr1989 78092 81806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1989g00014 39 357 Tify Gene Family AT3G17860 34.808 2.22e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium1989g00014 tify 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1989g00014 K13464 - gmx:100807043 494.967