Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1989g00013 ATGGAGAGAGATTTCATGGGTCTCAACTCGAAAGAACCACCCACTAAGGTGAAGGAGGAGATCAACGTTGATGGCTACGAAGGCTCTGGATTCACAAAGGGTTCCATTGCACAGTGGCCTTTCTCGAACAAAGTATCCGCAATTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTATCTTAAGTCAAGATGCAATTGAGTCTAGTCACAAACGCTCTGCCGGTGACACCCAGAAATCTTTCAATCACGATGGGCAAGGTGGTCATCATTTTTCGCTGACTCAACATGATGTGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCGGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCAACTGGTGGCCAGAATATGAATCGCACCAGTGTAAAGCAGTCATTCCTTGGGGGAATACCTGTTTCTGTGCCCCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGGTTGAACCATGTAACAGTATGAAACCATCTCCGCCTTCTGCCCAACTTACCATCTTCTATGGGGGAACTGTCAAAGTCTTTGATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGCAGTAGCGTATCTGTAGCTCATAGCATGGTCCAGCCAAAAGTTCACGTGCCGGTCTCGAAGATGGCTGCTGGCGACAGTGTGCCTGCGACTCAGCCTGCAAATACGCCACCCGGCTCTGGCCTTTCGAGCCCTATATCTGTTTCTTCACATACTGGAACACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCGAAAACAACTGGAGTTCCCACCACTCTTGTTAGCAATGTGGACCCTCCAAAGGTAGTCAGTGCAGCCACTATGTTGACATCAGCTGTACCTCAGGCTAGGAAAGCATCCTTGGCTAGATTTTTAGAAAAACGCAAAGAAAGGGTGACGAGTGCAGCACCATACAACCTTAACAGGAAGTCTGAAGAGTGTGGCCCTGCAGAATTTGGTGGTGCCATGTTTTCTGCAGGTGCTGCGACCAGTACTGTTTCGGCAATGCAAGGATAG 1152 0.4688 MERDFMGLNSKEPPTKVKEEINVDGYEGSGFTKGSIAQWPFSNKVSAIPHLMSFKASQDDKTKKMLSGPITAGLLSILSQDAIESSHKRSAGDTQKSFNHDGQGGHHFSLTQHDVNSVHRPHDVKMFSVPNQAISVSMGNPFLNNHFATGGQNMNRTSVKQSFLGGIPVSVPHLVIPNAGAVAGMVEPCNSMKPSPPSAQLTIFYGGTVKVFDDISAEKAQAIMLLAGSSVSVAHSMVQPKVHVPVSKMAAGDSVPATQPANTPPGSGLSSPISVSSHTGTQSGSGSTSTDEFLAAKTTGVPTTLVSNVDPPKVVSAATMLTSAVPQARKASLARFLEKRKERVTSAAPYNLNRKSEECGPAEFGGAMFSAGAATSTVSAMQG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1989g00013 383 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 124 356 IPR040390 -
Vium1989g00013 383 ProSiteProfiles Tify domain profile. 194 229 IPR010399 -
Vium1989g00013 383 MobiDBLite consensus disorder prediction 85 110 - -
Vium1989g00013 383 Pfam tify domain 195 228 IPR010399 -
Vium1989g00013 383 MobiDBLite consensus disorder prediction 256 291 - -
Vium1989g00013 383 Pfam Jas motif 326 350 IPR018467 -
Vium1989g00013 383 MobiDBLite consensus disorder prediction 252 291 - -
Vium1989g00013 383 SMART tify_2 194 229 IPR010399 -
Vium1989g00013 383 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1989g00013 Vium-Chr1989 78092 81807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1989g00013 39 359 Tify Gene Family AT3G17860 35.103 6.92e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium1989g00013 tify 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1989g00013 K13464 - gmx:100807043 501.901