Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1989g00002 ATGGCCGGAAGTTTTTCTTCTTCAATTGAGAAGCCTGAATTTCCATCAAATCTTAATATCCTTGCCATTGATACTGACCTCAAAGTTCTTGAATTCATTGAGAAATCATGCAACGAGAATTCTCATCAAGTTAAGATATGCTCTGAATCTTCAAGTGCGGTCGATCTTTTGCTGAAGAAAGAAATAGACTTTCATTTGATTTTCATGGAACTCCATATGCCAATGATGGATGGCTATGAATTTCTGCGTTTTCTTGATAAAGAAGTAATTGATGTTGCTTTCGTCATGATGTCTGAGGATGATACTGACCTATCCCATAAGAAGGCTTTTAAACTTGGAGCTTGCGATTATTGGGTTAAACCCTTCTTAGAGTATGCGTTTTTGTTCGAGAGGAGGCATTTGTGTTCACCTATGATGCAACATCATTTCCACTTCAGGCGCATAAGGAAAAATATTGATAGCTTGGAAGATGATGAAATAAGTGAGACAAGTTATAGTTCTGAATTCTCTTCTGAGGAAGAAGCCGAAGCCGATGATGATACTCTCCATAAGAAAGAATAA 561 0.3725 MAGSFSSSIEKPEFPSNLNILAIDTDLKVLEFIEKSCNENSHQVKICSESSSAVDLLLKKEIDFHLIFMELHMPMMDGYEFLRFLDKEVIDVAFVMMSEDDTDLSHKKAFKLGACDYWVKPFLEYAFLFERRHLCSPMMQHHFHFRRIRKNIDSLEDDEISETSYSSEFSSEEEAEADDDTLHKKE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1989g00002 186 MobiDBLite consensus disorder prediction 159 176 - -
Vium1989g00002 186 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vium1989g00002 186 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 122 IPR045279 GO:0009736
Vium1989g00002 186 MobiDBLite consensus disorder prediction 159 186 - -
Vium1989g00002 186 Pfam Response regulator receiver domain 20 122 IPR001789 GO:0000160
Vium1989g00002 186 SUPERFAMILY CheY-like 16 133 IPR011006 -
Vium1989g00002 186 Gene3D - 15 142 - -
Vium1989g00002 186 SMART REC_2 18 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1989g00002 Vium-Chr1989 20637 26811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1989g00002 2 181 Response Regulator Gene Family AT4G16110 26.667 6.11e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1989g00002 Response_reg 9e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1989g00002 - - vra:106765414 220.705