Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1988g00004 ATGGTGCAGCGTCTCACCTATCGCAAGCGGCACAGTTATGCCACAAAGTCCAACCAGCACAGGGTTGTCAAGACCCCTGGTGGGAAGCTCGTTTATCAGAGCACCAAGAAGAGGGCTAGCGGACCCAAGTGCCCCGTCACTGGCAAGAGGATTCAGGGGATTCCACACTTGAGGCCTGCGGAATACAAGAGGTCAAGGTTACCTAGAAACCGTAGGACTGTAAACCGTGCATATGGTGGAGTTTTGTCCGGAAGTGCTGTCAGGGAGAGGATTATCCGAGCTTTCTTAGTTGAGGAGCAGAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCCAAGGAAAAGCAGGCCTTGAAGGGTTAA 363 0.5179 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQALKG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1988g00004 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00004 120 Gene3D - 39 120 - -
Vium1988g00004 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 116 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00004 120 Gene3D - 1 37 - -
Vium1988g00004 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00004 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00004 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00004 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00004 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1988g00004 Vium-Chr1988 23690 25341 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1988g00004 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 91.597 1.70e-75 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1988g00004 K02915 - sind:105177244 214.542