Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1988g00001 ATGCTGACGGTTGTGGGGGAAGGAAAAGAGGTTACCATGATGATGGAGGAATGGAGAGAGCATGAAGAGAAAACGGAGATAGATTTCGAGAAGAAGGGGCAGGGGAAATCGAGAAATGAAATGCCACAGCCCATGATACCCTTCACATTGCAGATTCCACACTTGAGGCCTGCGGAATACAAGAGGTCAAGGTTACCTAGAAACCGTAGGACTGTAAACCGTGCATATGGTGGAGTTTTGTCCGGAAGTGCTGTCAGGGAGAGGATTATCCGAGCTTTCTTAGTTGAGGAGCAGAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCCAAGGAAAAGCAGGCCTTGAAGGGTTAA 357 0.4762 MLTVVGEGKEVTMMMEEWREHEEKTEIDFEKKGQGKSRNEMPQPMIPFTLQIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQALKG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1988g00001 118 MobiDBLite consensus disorder prediction 20 37 - -
Vium1988g00001 118 Gene3D - 49 118 - -
Vium1988g00001 118 PANTHER 60S RIBOSOMAL PROTEIN L34 8 114 IPR008195 GO:0003735|GO:0005840|GO:0006412
Vium1988g00001 118 MobiDBLite consensus disorder prediction 20 44 - -
Vium1988g00001 118 Pfam Ribosomal protein L34e 52 94 IPR008195 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1988g00001 Vium-Chr1988 5603 7660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1988g00001 44 117 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 82.051 9.92e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1988g00001 K02915 - gmx:100499882 107.457