Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00018 ATGGGAAGAAGACCGGCGCGTTGTTACCGTCAGATAAAGAACAAGCCGTATCCGAAGTCGCGGTTCTGCCGCGGCGTTCCGGATCCAAAGATCCGAATATACGACGTGGGGATGAAGAAGAAAGGCGTGGACGAGTTTCCCTTCTGCGTCCACCTCGTCTCCTGGGAGAAGGAGAACGTGTCCAGCGAGGCCTTGGAGGCGGCGCGCATAGCCTGCAACAAGTACATGGCGAAGTTCGCGGGAAAGGACGCGTTCCACCTGCGCGTTAGGGTGCACCCCTTCCATGTGCTCCGTATCAACAAGATGCTATCGTGCGCCGGGGCGGACAGGCTCCAGACCGGGATGAGGGGGGCTTTCGGGAAGCCGCAGGGGACGTGCGCGAGAGTGAGTATTGGACAGGTGCTGCTCTCCGTTCGATGTAAGGATGGGAATGGTCAGCACGCTCAGGAGGCTCTTCGCCGCGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATTATTGTCAGCAGAAAGTGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGCGCCCGGAAGAGCTTTCTTACCAGCTACTGCTTAGGTCATTTACCAGTAGGAAATTAATTGAATGTATGGCTTTTCGTTTCACCTGGTGA 636 0.5629 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNGQHAQEALRRAKFKFPGRQKIIVSRKWFLGVTDLWQIVRPEELSYQLLLRSFTSRKLIECMAFRFTW 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00018 211 Gene3D Ribosomal protein L10e/L16 1 188 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 PANTHER 60S RIBOSOMAL PROTEIN L10 1 173 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 SUPERFAMILY Ribosomal protein L16p/L10e 4 171 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 NCBIfam 50S ribosomal protein L16 1 171 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vium1987g00018 211 FunFam 60S ribosomal protein L10 1 195 - -
Vium1987g00018 211 PIRSF RPL10a_RPL10e 1 179 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00018 Vium-Chr1987 202461 204747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00018 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 92.982 3.02e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1987g00018 K02866 - csv:101216482 353.214