Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00016 ATGTATCTTTCAAAGAGTTTCAAGCATGAAGTTGTTGTCATCCTGTGGTTTTGTTGCTATTTGCTACATGCTGCTGGGCAGAATAACATCACTAGCACTGTTGAAGTTGAAGCATTGATAGCCATTAAGAGTAGTTTGATTGATCCTAATGGAAATTTAAGCAATTGGAATCATGGAGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACACAGGAGGATGGCTATCTGCATGTTGAAGAATTGCAATTACTGAGTTTGCAACTGTCTGGAACCTTGGCACCAGAGCTTGGCAAATTAACATACATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGCAGTATTCCAAAGGAAGTTGGCAATATCAAATCTTTGGAACTATTGCTCCTGAATGGAAATAATTTAACAGGTTCACTACCAGAGGAGATTGGCTATCTTCCAAACCTGGATAGAATACAAATAGATCAGAACCATATATCAGGACCTCTACCTACGTCATTTGCAAATCTGAACAAGACAAAGCATTTTCACATGAACAACAACTCACTCAGCGGGCAAATCCCACCAGAGCTTTCTCGATTACCAAATCTTGTTCACCTTCTTCTCGACAATAACAACTTATCTGGATATCTTCCCCCTGAGCTGTACAAGTTGCCAAAATTACTTATCATTCAACTTGATAACAATAACTTTGAAGGAAATAGTATTCCTGATACGTATGGCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGTTTGACAGGACCAGTTCCTGACTTAAGCAGGATACCTCACCTTCTTTATCTTGACCTTAGTTTCAACCAGTTGAACGAATCAATTCCTGCCAATAAGCTTTCTGAGAATATCACAACCATTGATTTATCAAACAACCACCTAACTGGAAATATTCCATCTTACTTTGTTGATCTTCCACGTCTTCAGAAGTTGTCACTTGCAAACAATTCATTGAATGGCACTGTTTCATCCTCTATTTGGACGAATAAGACTTCAAATGGAACAGAAAACTTTCTTTTGGAGTTGCAAAATAATAGCCTTACAGCTATATCAGGAAGTATTGATCTTCCTCCAAACGTCACAGTTGTGCTTGATGGGAATCCCCTTTGCTCAAACAAAACCCTTGATCACTTCTGTGGACCTGGTGGTGCTACTGTAACAAATGGCTCATTCACTACAAACTCCAGTTCATGTAAACCTCAAGCATGCCCTCCTCCTTATGAGTACTCTGTTGATTGTTTCTGTGCACTTCCATTGCTTGTTGCCTATCGGCTGAAAAGTCCTGGATTTTCAGACTTTACTCCGTATTTGGATGATTTTGAGACCTACATGACTACTGGTCTTCAATTATCTACTGATCAGCTAGAATATACTTTTTATTGGCAAGCAGGACCTCGATTGAGAATGGACTTGAAATTTTTTCCTCTATATGTTAATAACACTAGCAATCATACTTTCAATAGAAGTGAGCTCCTACGGATCAGAAGCATGTTCACAGGATGGCTAATTCAAGACAGTGATCTATTTGGACCTTATGAACTGCTTGCCTTCGATCTTTTGGGTCTTTACGAGGATGAAATTGGCAAGGATTCAAAATCAGGAATAAGCACAGGTGCACTGGTTGGCATAGTTGTAGGGGCAATTGCTTGTGCAGTGACATTATCTGCAATTGTTACCCTTCTTATATTGAGAATCAAAATGAGAGGCTACCATACTGTTTCAAAGCGACGTCAGGCATCTAAAATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTCCGCCACAAACAATTTCAGCATTTCTGCTCAAGTTGGACAAGGTGGCTATGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAATTGTTGCCATAAAACGTGCTCAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCAGTTACAGCGAAAGAACCCTTGACTTTTGCCATGAGATTGAAAATTGCACTAGGGGCAGCTAAAGGCCTCATGTATCTACACACAGAAGCTGATCCTCCAATATTCCACCGAGACGTAAAGGCCAGCAACATATTATTAGACTCTAAATTTTCGGCAAAAGTGGCTGATTTTGGACTTTCGCGGCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTTCCTGGTCATGTATCTACGGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTTAATATTGCGTACCAATCAGGTGTAATATTTTCAATTATCGATGGACGCATGGGGTCTTATCCATCTGAGCATGTGGAGAAATTTTTGACATTGGCCTTGAAGTGTTGCGAAGATGAGCCAGAGGCACGGCCTAGAATGGCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCCACAATGCCAGAATCAGATACCAAGAAAGCTGAATTTATGTCCAGTGATTCTGGCAAAACTGACATTCACAGTATACCATCTTCATCCTCTGCTTCTGCTATGAAGACTCCTTTTGTATCAGGGGATGTGTCTGGTAGCGATCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2856 0.4034 MYLSKSFKHEVVVILWFCCYLLHAAGQNNITSTVEVEALIAIKSSLIDPNGNLSNWNHGDPCTSRWKGVLCFNETQEDGYLHVEELQLLSLQLSGTLAPELGKLTYMKRLNFMWNNISGSIPKEVGNIKSLELLLLNGNNLTGSLPEEIGYLPNLDRIQIDQNHISGPLPTSFANLNKTKHFHMNNNSLSGQIPPELSRLPNLVHLLLDNNNLSGYLPPELYKLPKLLIIQLDNNNFEGNSIPDTYGNMSKLLKMSLRNCSLTGPVPDLSRIPHLLYLDLSFNQLNESIPANKLSENITTIDLSNNHLTGNIPSYFVDLPRLQKLSLANNSLNGTVSSSIWTNKTSNGTENFLLELQNNSLTAISGSIDLPPNVTVVLDGNPLCSNKTLDHFCGPGGATVTNGSFTTNSSSCKPQACPPPYEYSVDCFCALPLLVAYRLKSPGFSDFTPYLDDFETYMTTGLQLSTDQLEYTFYWQAGPRLRMDLKFFPLYVNNTSNHTFNRSELLRIRSMFTGWLIQDSDLFGPYELLAFDLLGLYEDEIGKDSKSGISTGALVGIVVGAIACAVTLSAIVTLLILRIKMRGYHTVSKRRQASKISIKIDGVRAFTYGELSSATNNFSISAQVGQGGYGKVYKGTLSDGTIVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNIAYQSGVIFSIIDGRMGSYPSEHVEKFLTLALKCCEDEPEARPRMAEVVRELENIWSTMPESDTKKAEFMSSDSGKTDIHSIPSSSSASAMKTPFVSGDVSGSDLVSGVIPSIKPR 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00016 951 SUPERFAMILY L domain-like 45 389 - -
Vium1987g00016 951 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 192 294 - -
Vium1987g00016 951 SMART serkin_6 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1987g00016 951 FunFam Leucine-rich repeat protein kinase family protein 583 693 - -
Vium1987g00016 951 Gene3D Transferase(Phosphotransferase) domain 1 694 912 - -
Vium1987g00016 951 PANTHER RECEPTOR-LIKE PROTEIN 55 42 891 - -
Vium1987g00016 951 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Vium1987g00016 951 MobiDBLite consensus disorder prediction 901 940 - -
Vium1987g00016 951 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Vium1987g00016 951 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 191 - -
Vium1987g00016 951 Gene3D Ribonuclease Inhibitor 189 383 IPR032675 -
Vium1987g00016 951 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Vium1987g00016 951 SMART LRR_typ_2 319 343 IPR003591 -
Vium1987g00016 951 SMART LRR_typ_2 128 152 IPR003591 -
Vium1987g00016 951 SMART LRR_typ_2 200 224 IPR003591 -
Vium1987g00016 951 SMART LRR_typ_2 272 297 IPR003591 -
Vium1987g00016 951 Pfam Protein kinase domain 620 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1987g00016 951 MobiDBLite consensus disorder prediction 909 931 - -
Vium1987g00016 951 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1987g00016 951 SUPERFAMILY Protein kinase-like (PK-like) 603 908 IPR011009 -
Vium1987g00016 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 903 - -
Vium1987g00016 951 CDD STKc_IRAK 624 890 - -
Vium1987g00016 951 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Vium1987g00016 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00016 Vium-Chr1987 187357 201501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00016 18 900 Receptor kinase-like Gene Family AT5G01950 59.553 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vium1987g00016 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1987g00016 - - gmx:100786467 1632.46