Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00013 ATGATGACTGGCAAAGTTTACTCCATATTCAATTGCCAATATATTTTTCCTTCCAGAAAACAACTCGCCATGAAGTTTCCTTCAACTTCAGGCACTTCTTTTCTTTTTGTCATAGTGATTCTTTTCCCTTTAGTTATTGCTGATCTAAGTTCAGATAAGCAAGCCCTTCTTGATTTGGTCAATGCTGTCCCCCACCGGCGAAACCTTTCATGGAATCCAACCGCCTCAGTCTGTGAATCATGGGTAGGCATTACTTGCAATGAAGATAGAACTCGTGTTGTTAAGGTTCGGCTTCCCGGCGTTGGACTAGTTGGCACCATCCCATCAAATACACTTGGCAAGCTTGATGCTGTGAAAATTATTAGCCTTCGGTCCAACCTACTCAGTGGAAATCTCCCTGCTGACATTGCTTCTCTTCCTTCTCTTCAGTATCTCTATCTCCAGCATAACAACCTTTCTGGTGATATACCTGCATCATTGTCTCCCCAACTTGTTGTGCTTGATTTGTCATATAATTCCTTCACCGGTGGCATTCCAAAGACATTTCAAAATTTTTCAGAACTAACTAGTTTGAATCTCCAAAACAACTCCCTATCTGGAGTGATACCCAATCTCAATGTCACTCAGCTTAGGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCTATTCCTAAAGCTCTTCAGAGTTTTCCAAATTCTTCCTTTGAAGGAAACTCACTTTTATGCGGACCTCCCCTAAAGCCGTGCTCGGGGGTTCCTCCTAGACCTTCTCCTGCCTTGTCTCCACCTCCATCATCAACTCCAGGGAGACAAAACTCAAAATACAAATTGAGTAAAATAGCTATCATTGCAATTGGTGTTGGAGGAGCTGTGGTGTTATTCTTTATTGTTCTTGTCATTGTTATTTGTTGGGTGAAGAAAGAAGGCGGCAGAGGCTCCAATGTGATCAAAGGAAAGGGCTCTGGTGGTGGCAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTTCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTCCTGGGAAAGGGTAGTTATGGCACTGCCTATAAGGCCATACTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGGAAGAAGGACTTTGAACAGCAGATGGAAATTATGGGAAGAGTTGGACAACACACAAATGTTGTCCCCCTTCGCGCTTATTACTATTCAAAAGATGAAAAGCTTCTGGTTTATGACTATATCCTAGGTGGTAACCTACACACACTCTTGCATGGTGGAAGAACGGGTGGAAGAACTCCCTTAGACTGGGAGTCCCGGATAAGAATATCCCTTGGAAGTGCCAAAGGACTGGCTCACATTCATTCTGTTGGTGGTCCCAAATTCTCACATGGAAACATCAAGTCCTCAAATGTTCTTCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGTCTTGCCCCTCTTATGAACATTCCTGCTACTCCTTCTAGAGCTGCTGGTTATCGTGCTCCAGAGGTGATTGAAACCCGAAAACACTCTCATAAATCAGATGTGTACAGCTTCGGTGTCCTCCTTCTTGAGATGCTTACTGGGAAGGCTCCTCTGCAATCTCCTGGACGTGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAATGGACTGCAGAAGTTTTTGATGTTGAGCTTATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATAGCCATGGCCTGTGTGGCCAAGGTGCCAGATATGAGGCCTACCATGGATGAAGTAGTAAGAATGATCGAAGAGATTCGGCAATCTGACTCAGAGAACCGACCATCTTCTGAAGAAAATAAATCTAAGGACTCAAATGTTCAGACTCCATAG 1977 0.4345 MMTGKVYSIFNCQYIFPSRKQLAMKFPSTSGTSFLFVIVILFPLVIADLSSDKQALLDLVNAVPHRRNLSWNPTASVCESWVGITCNEDRTRVVKVRLPGVGLVGTIPSNTLGKLDAVKIISLRSNLLSGNLPADIASLPSLQYLYLQHNNLSGDIPASLSPQLVVLDLSYNSFTGGIPKTFQNFSELTSLNLQNNSLSGVIPNLNVTQLRLLNLSYNHLNGSIPKALQSFPNSSFEGNSLLCGPPLKPCSGVPPRPSPALSPPPSSTPGRQNSKYKLSKIAIIAIGVGGAVVLFFIVLVIVICWVKKEGGRGSNVIKGKGSGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYILGGNLHTLLHGGRTGGRTPLDWESRIRISLGSAKGLAHIHSVGGPKFSHGNIKSSNVLLNQDNDGCISDFGLAPLMNIPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00013 658 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 439 646 - -
Vium1987g00013 658 MobiDBLite consensus disorder prediction 316 338 - -
Vium1987g00013 658 Gene3D Ribonuclease Inhibitor 49 205 IPR032675 -
Vium1987g00013 658 Pfam Leucine rich repeat N-terminal domain 50 87 IPR013210 -
Vium1987g00013 658 SUPERFAMILY Protein kinase-like (PK-like) 367 641 IPR011009 -
Vium1987g00013 658 FunFam Leucine-rich repeat receptor-like protein kinase 51 161 - -
Vium1987g00013 658 ProSitePatterns Protein kinases ATP-binding region signature. 369 400 IPR017441 GO:0005524
Vium1987g00013 658 Gene3D Transferase(Phosphotransferase) domain 1 440 657 - -
Vium1987g00013 658 Gene3D Ribonuclease Inhibitor 206 251 IPR032675 -
Vium1987g00013 658 FunFam Leucine-rich repeat receptor-like protein kinase 162 250 - -
Vium1987g00013 658 ProSiteProfiles Protein kinase domain profile. 363 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1987g00013 658 SUPERFAMILY L domain-like 62 250 - -
Vium1987g00013 658 Pfam Protein kinase domain 366 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1987g00013 658 MobiDBLite consensus disorder prediction 253 273 - -
Vium1987g00013 658 MobiDBLite consensus disorder prediction 324 338 - -
Vium1987g00013 658 PANTHER OS05G0588300 PROTEIN 35 646 - -
Vium1987g00013 658 MobiDBLite consensus disorder prediction 633 658 - -
Vium1987g00013 658 Pfam Leucine rich repeat 162 220 IPR001611 GO:0005515
Vium1987g00013 658 Pfam Leucine rich repeat 106 152 IPR001611 GO:0005515
Vium1987g00013 658 Gene3D Phosphorylase Kinase; domain 1 331 438 - -
Vium1987g00013 658 FunFam pollen receptor-like kinase 1 331 438 - -
Vium1987g00013 658 MobiDBLite consensus disorder prediction 633 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00013 Vium-Chr1987 92466 97196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00013 26 656 Receptor kinase-like Gene Family AT5G58300 67.767 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium1987g00013 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1987g00013 - - gmx:100796171 1107.43