Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00011 ATGAGTGACACAAACCAACCTTTCATGTCCCTCCAACCAACCATGAATCTCTCTCACCCCTTCAACCCACCAACCTCAAGCTCTAATTTTTACACCCACCCACCATGCAAACCCCCCAAAAACCCCCAACCACCGCACAAGAAGCTCCTCCGGGTCATCCTCACCGACCACGACGCCACCGACTCCGAATCCTCCGGCGACGACGACGGCCCCAAAAGCCCATCTAAACACAAAAAAGTGAAAAGAGAAATCACCCACATCACTATAAACTTTCCCTTTATCCCGGAACCCCCAACGATAACCCCTTCTTTTTCCACCAACCCCACCCCTTTAACCCAACCCGAGAAGCGGCCCGCCGCCCCTCGCCGCCGGAACAAGTTCCGAGGTGTCCGGCAGAGACCATGGGGACGATGGACCGCCGAGATCCGCGACCCGACCCAAAGAAAACGGGTCTGGCTCGGTACCTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCCGTGAAGCTCAAGGGGCCTGACGCCGTCACCAACTTCCCCGTCGCCGCTAACGGAAAAAGAGAACTCCACGTTTCACCCCCGGAGGCGGCCTGTTCCGGCGACGGTTTCGCGTCGCCGACGTCTGTCCTCACATACTGCGACGGAGACTCCTCGCCGTTCGACGGTTTCCGTTACGGCGAGGTCGATGCATTCGGGTTTGACATCGACGCGCCGTTTAGTCTGACGGATGTTAACATGAGCGTGCTGAATCAGCGCTACGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCAAATTAA 825 0.583 MSDTNQPFMSLQPTMNLSHPFNPPTSSSNFYTHPPCKPPKNPQPPHKKLLRVILTDHDATDSESSGDDDGPKSPSKHKKVKREITHITINFPFIPEPPTITPSFSTNPTPLTQPEKRPAAPRRRNKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPDAVTNFPVAANGKRELHVSPPEAACSGDGFASPTSVLTYCDGDSSPFDGFRYGEVDAFGFDIDAPFSLTDVNMSVLNQRYAKEEFGEFDPDEFLTWPN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00011 274 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Vium1987g00011 274 MobiDBLite consensus disorder prediction 95 130 - -
Vium1987g00011 274 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Vium1987g00011 274 MobiDBLite consensus disorder prediction 50 76 - -
Vium1987g00011 274 MobiDBLite consensus disorder prediction 1 34 - -
Vium1987g00011 274 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Vium1987g00011 274 PIRSF PTI6 20 274 IPR017392 GO:0003700
Vium1987g00011 274 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Vium1987g00011 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 214 - -
Vium1987g00011 274 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Vium1987g00011 274 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Vium1987g00011 274 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Vium1987g00011 274 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Vium1987g00011 274 MobiDBLite consensus disorder prediction 1 82 - -
Vium1987g00011 274 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00011 Vium-Chr1987 77854 79196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00011 8 215 AP2-EREBP Transcription Factor Family AT4G27950 39.823 8.23e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1987g00011 AP2 6.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1987g00011 K13434 - gmx:102660028 400.593