LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1987g00009	ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCGACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACCACCACCACAACCATAACAACCACCACAAGCTTGCATTCACCTCCAACAACAACAACAACACCAACGCCAATGGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCACCTCCGTCGCCGAGGATTTTCGCCACACCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGTATGACTCCGGAGCAGATTGAAGAGGTCCGTTCCCGGCTTAATCTTGATGTTACTGTTGCATCTGATTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCACTCAAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATTTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTAGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTTGAGTCATTAAAAACTGCTATTGTTGTGGGCGGAACAAACATTGAAAAGCAGAGGGCAGAACTTAGAGCAGGGATTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTGCAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCTGAGAAGCATCAAACATTGCTTTTTAGTGCAACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGCCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACGGGGCGTGCAGGATCAACTGGATTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGACGCCGAATCTGGGAACACGCTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCTGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAGTATAAATTCATGATTACTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGACGATTAA	1722	0.4675	MSYVPPHLRNNGSATVATARTPSVTLDNNNHHHNHNNHHKLAFTSNNNNNTNANGSPSLPSFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGIEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITAANIKREGAADSAWDD	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1987g00009	573	SMART	ultradead3	147	350	IPR014001	-
	Vium1987g00009	573	SMART	helicmild6	395	476	IPR001650	-
	Vium1987g00009	573	MobiDBLite	consensus disorder prediction	28	98	-	-
	Vium1987g00009	573	Coils	Coil	214	234	-	-
	Vium1987g00009	573	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	159	335	IPR014001	-
	Vium1987g00009	573	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	281	289	IPR000629	-
	Vium1987g00009	573	CDD	DEADc	139	336	-	-
	Vium1987g00009	573	CDD	SF2_C_DEAD	347	485	-	-
	Vium1987g00009	573	Gene3D	-	88	339	IPR027417	-
	Vium1987g00009	573	Coils	Coil	517	537	-	-
	Vium1987g00009	573	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	128	156	IPR014014	GO:0003724
	Vium1987g00009	573	Pfam	DEAD/DEAH box helicase	152	322	IPR011545	GO:0003676\|GO:0005524
	Vium1987g00009	573	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	359	517	IPR001650	-
	Vium1987g00009	573	MobiDBLite	consensus disorder prediction	40	71	-	-
	Vium1987g00009	573	Gene3D	-	341	535	IPR027417	-
	Vium1987g00009	573	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	95	528	-	-
	Vium1987g00009	573	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	200	496	IPR027417	-
	Vium1987g00009	573	Pfam	Helicase conserved C-terminal domain	359	476	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1987g00009	Vium-Chr1987	37039	45866	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1987g00009	128	498	Eukaryotic Initiation Factors Gene Family	AT1G72730	34.933	2.19e-68	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1987g00009	K12823		-	gmx:100818387	995.342