Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00008 ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCGACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACCACCACCACAACCATAACAACCACCACAAGCTTGCATTCACCTCCAACAACAACAACAACACCAACGCCAATGGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCACCTCCGTCGCCGAGGATTTTCGCCACACCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGTATGACTCCGGAGCAGATTGAAGAGGTCCGTTCCCGGCTTAATCTTGATGTTACTGTTGCATCTGATTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCACTCAAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATTTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTAGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTTGAGTCATTAAAAACTGCTATTGTTGTGGGCGGAACAAACATTGAAAAGCAGAGGGCAGAACTTAGAGCAGGGATTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTGCAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCTGAGAAGCATCAAACATTGCTTTTTAGTGCAACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGCCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGTCAAATTTAATTTTCTTGACAAATGCATACCTGAAGCATCAGTTATGGCTGCCTCAATTATAG 1443 0.4678 MSYVPPHLRNNGSATVATARTPSVTLDNNNHHHNHNNHHKLAFTSNNNNNTNANGSPSLPSFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGIEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKSNLIFLTNAYLKHQLWLPQL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00008 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 480 IPR001650 -
Vium1987g00008 480 SMART ultradead3 147 350 IPR014001 -
Vium1987g00008 480 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 95 461 - -
Vium1987g00008 480 MobiDBLite consensus disorder prediction 28 98 - -
Vium1987g00008 480 Coils Coil 214 234 - -
Vium1987g00008 480 CDD SF2_C_DEAD 347 461 - -
Vium1987g00008 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Vium1987g00008 480 Gene3D - 337 471 IPR027417 -
Vium1987g00008 480 SMART helicmild6 395 462 IPR001650 -
Vium1987g00008 480 FunFam probable ATP-dependent RNA helicase DDX17 88 338 - -
Vium1987g00008 480 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Vium1987g00008 480 CDD DEADc 139 336 - -
Vium1987g00008 480 Gene3D - 88 336 IPR027417 -
Vium1987g00008 480 Pfam DEAD/DEAH box helicase 152 322 IPR011545 GO:0003676|GO:0005524
Vium1987g00008 480 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Vium1987g00008 480 MobiDBLite consensus disorder prediction 40 71 - -
Vium1987g00008 480 Pfam Helicase conserved C-terminal domain 359 461 IPR001650 -
Vium1987g00008 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 461 IPR027417 -
Vium1987g00008 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 337 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00008 Vium-Chr1987 37037 44736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00008 128 459 Eukaryotic Initiation Factors Gene Family AT3G13920 34.524 1.69e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1987g00008 K12823 - gmx:100818387 801.971