Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00007 ATGGATCTTCTCTTCTTACCAAAAGTTCTTACCGCGCTTTTCTTTGCGACGGTGATTGCAGTGACGGATGCAAAGCTTCGCGGGAAGCGGTTCAGGCTGCCACCGGGACCGTTTTCTGTACCGATATTTGGTAACTGGCTTCAGGTTGGCGATGACCTGAATCACCTTAACCTTGCCGACATTGCACGTTGCTTTGGCGACATATTTCTCCTCCGCATGGGGCAGCGGAATTTGGTGGTGGTCTCTTCGCCTGAGCTTGCGAAGGAGGTTCTCCACACGCAGGGCGTGGAGTTCGGCTCGCGCACGCGCAACGTCGTCTTCGACATCTTCACCGGGAAAGGCCAGGACATGGTGTTCACCGAGTACGGCGATCACTGGCGCAAGATGCGCCGCATAATGACGGTCCCGTTCTTCACCAACAAGGTCGTGCAGCAGTACCGCGTCGGGTGGGAGGACGAGGCGGCGCGTGTAGTGGAGGACATACGCCGCAGCCCCGACGCCGCGGTCGGAGGGATCGTTCTGCGGCGGAGACTGCAACTCATGATATATAACATCATGTATAGGATCATGTTCGATAGAAGGTTCGAGAACGAGGAGGACCCGTTGTTTCAGAAGCTTCGAGTTTTGAACGGTGAGAGGAGTCGTTTGGGGCAGAGCTTTGAGTACAACTACGGTGATTTTATCCCTGTTTTGCGGCCATTTTTGCGTGGGTACTTGAAGATTTGCAAGGAGGTTAAGGACACCAGGTTCAAACTCTTCAAGGATTATTTCATTGAGGAACGAAAGAATCTTGAAAATACCAAGAAAAGGGACAATGGAGGACTTAAATGCGCCATCGATCACATTTTGGACGCTCAGAGAAAAGGAGAGATTAGTGAGGATAATGTCCTTTACATTGTTGAGAACATTAACGTTGCTGCAATCGAGACAACTCTGTGGTCAATTGAATGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAAAACAAGGTGAGGGAGGAGATTGAGAGAGTTGTAGGAGCAGGACACCAAGTGACAGAGCAAGACATTCACAAGCTCACTTACCTTCAGGCAGTGATAAAGGAAACACTTCGGCTGAGAATGGCAATTCCACTCCTCGTCCCACACATGAACCTCCATGATGCTAAACTTGGAGGCTATGACATCCCTGCAGAGAGCAAGATCTTGGTGAATGCATGGTGGCTTGCCAACAACCCTGCTCAGTGGAAGAAGCCCGAGGAGTTCAGGCCTGAGAGGTTCTTGGAGGAAGAGTCGAAAGTAGAGGCGAATGGGAATGACTTCAGATACCTTCCCTTTGGTGTTGGGAGGAGGAGCTGCCCTGGAATTATCCTTGCATTGCCTATTATGGGCATTACTTTGGGGCGTTTGGTCCAAAATTTTGAGCTCTTGCCTCCCCCAGGACAAGACAAGCTTGATACCACTGAGAAAGGGGGCCAGTTTAGTCTGCACATACTCAAACACTCAACCATTGTCGCAAACCCAATATCATTTTAA 1518 0.5046 MDLLFLPKVLTALFFATVIAVTDAKLRGKRFRLPPGPFSVPIFGNWLQVGDDLNHLNLADIARCFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTEYGDHWRKMRRIMTVPFFTNKVVQQYRVGWEDEAARVVEDIRRSPDAAVGGIVLRRRLQLMIYNIMYRIMFDRRFENEEDPLFQKLRVLNGERSRLGQSFEYNYGDFIPVLRPFLRGYLKICKEVKDTRFKLFKDYFIEERKNLENTKKRDNGGLKCAIDHILDAQRKGEISEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQNKVREEIERVVGAGHQVTEQDIHKLTYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAQWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPIMGITLGRLVQNFELLPPPGQDKLDTTEKGGQFSLHILKHSTIVANPISF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00007 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 2 504 - -
Vium1987g00007 505 CDD CYP73 65 496 - -
Vium1987g00007 505 SUPERFAMILY Cytochrome P450 34 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Vium1987g00007 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 FunFam Trans-cinnamate 4-monooxygenase 23 497 - -
Vium1987g00007 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 Gene3D Cytochrome P450 24 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1987g00007 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00007 Vium-Chr1987 24761 27768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00007 1 502 Monolignol Biosynthesis Gene Families AT2G30490 79.283 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1987g00007 K00487 - nnu:104593756 885.174