Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1987g00005 ATGAAAGACACAATTCAAATTCCAATCACACTCACCGGCTTGCTCCGCCACGTGGCTGCCAAATTCCCCTCCCGTCGAGCCATCTCTGTCGCCGGCAAATACGACATCACCCACTCCCGCCTCCACCACCTCACAGAATCCACCGCCGCTCGATTGGTCGCTGCCGGCATCAAACCGGGCGACGTCGTCGCCCTCGTCTTCCCCAACACCGTCGAGTTTGTTGTCATGTTTTTAGCCGTCATTCGAGCGCGAGCCACAGCCGCGCCGTTAAACCCAGCTTACACGGCCGATGAGTTTGAGTTTTACTTATCCGACTCAGATTCAAAGCTTCTGGTCACATCACTGGAAGGAAACACGCCGGCTCAAGCTGCAGCTTCGAAACTCAATATCGCTCACGCCGCGGCTTCTTTGACCCAAAGCGAAAACGAAGAAGCCGAGCTTAGTCTCTCGTTGAGCCACTCTTTTGACTCGGTTGAGTCACTCGTTAACGATCCTGCTGACGTGGCGCTTTTCCTTCACACGTCCGGAACCACGAGCCGTCCCAAGGGGGTGCCGCTGACCCAGCACAACTTGCTCTCTTCCGTGAGGAACATTGACTCGGTGTATCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCGCTGTTCCATGTGCATGGGTTGATCGCCGGGCTGCTGAGTTCTCTCGGCGCCGGCGCGGCTGTGGCGCTGCCGGCGGCAGGGAGGTTCTCCGCTTCAGCATTCTGGAAGGACATGGTTAAGTACAACGCCACGTGGTACACTGCGGTTCCTACCATACACCAGATCATACTGGATCGTCACTTTAACAATCCCGAACCAGTTTACCCGAGGCTCCGGTTCATCCGGAGCTGCAGCGCGTCTCTTGCACCGGCTATCATGGGTAAACTGGAGGAGGCTTTCAGTGCCCCCGTCTTGGAGGCTTATGCAATGACGGAAGCCTCGCATCTCATGGCTTCGAACCCTTTACCCCAAGATGGGCCCCACAAGGCCGGGTCGGTTGGGAAGCCCGAAGGCCAAGAAATGGGTATACTGGATGAATCGGGTCGGGTCCAGGAGGTTGGAGTTAGTGGAGAGGTTTGCATTCGCGGACCCAATGTAACGAACGGATATAAACACAACGTGGAAGCTAACACGGCGGCGTTTCAGTTCGGTTGGTTTCACACCGGTGATATTGGATACTTTGATTCTGATGGGTATTTGCACCTAGTGGGTCGGATCAAGGAACTCATCAACCGCGGAGGTGAAAAGATATCACCAATAGAAGTTGATGCTGTCCTTCTTTCACACCAGGACATTGCTCAAGCAGTTGCTTTCGGAGTGCCTGATCCAAAGTATGGGGAGGAGATATATTGTGCTGTGATCCCAAGAGAAGGATCAAACATTGATGAGGCAGAGTTACTAAGATACGGCAAGAAGAATCTTGCATCCTTCAAAGTCCCCAAAAAGGTTTTCTTCACTGATGCTTTGCCCAAGACTGCCACAGGAAAGATTTTGCGCCGACTTGTGGCAGAACATTTCGTCTCTCAAATTTGA 1557 0.5344 MKDTIQIPITLTGLLRHVAAKFPSRRAISVAGKYDITHSRLHHLTESTAARLVAAGIKPGDVVALVFPNTVEFVVMFLAVIRARATAAPLNPAYTADEFEFYLSDSDSKLLVTSLEGNTPAQAAASKLNIAHAAASLTQSENEEAELSLSLSHSFDSVESLVNDPADVALFLHTSGTTSRPKGVPLTQHNLLSSVRNIDSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHFNNPEPVYPRLRFIRSCSASLAPAIMGKLEEAFSAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPEGQEMGILDESGRVQEVGVSGEVCIRGPNVTNGYKHNVEANTAAFQFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHQDIAQAVAFGVPDPKYGEEIYCAVIPREGSNIDEAELLRYGKKNLASFKVPKKVFFTDALPKTATGKILRRLVAEHFVSQI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1987g00005 518 SUPERFAMILY Acetyl-CoA synthetase-like 8 516 - -
Vium1987g00005 518 PANTHER ACYL-COA SYNTHETASE 10 515 - -
Vium1987g00005 518 Pfam AMP-binding enzyme 16 420 IPR000873 -
Vium1987g00005 518 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Vium1987g00005 518 Gene3D - 414 516 IPR045851 -
Vium1987g00005 518 FunFam 4-coumarate--CoA ligase 2 416 517 - -
Vium1987g00005 518 Pfam AMP-binding enzyme C-terminal domain 429 504 IPR025110 -
Vium1987g00005 518 Gene3D - 9 413 IPR042099 -
Vium1987g00005 518 CDD FACL_fum10p_like 23 512 IPR045310 GO:0016874
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1987g00005 Vium-Chr1987 15886 18819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1987g00005 10 518 Monolignol Biosynthesis Gene Families AT4G05160 30.418 1.76e-58 201