Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium197g00002 ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCGCAGGTTCATCTGAGACTTCCTTGCTTAATGCTCGGAAAAAAGTTGCAAGCAGTGCATGGGGAATACCTCGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCGCATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGGCCAACCAGTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGATGAGGGACGTGATCCTTTTGATGATTTTGAAGCCACTGCAATAGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTATTTGTCAATGGAGGAGAATTTGAGATGGATTGTGAACCCCAAGAGAGCCTTAACATTGGCATATCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATAGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCAAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGGACTTTTAGACATCAAGTGGGTTCACCCGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCACCAACCATTTGTCTGGATTGGCGGCAATTCTTTCCCCACATGCAGCAACCTCTCCCAAGATTGCTCCAATTGGCAAGGACCCTGGAAGGACTGCAAATCAGCTGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAATGCAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCTGGAATCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCATCACGTTGGATCTGCTCCATCAGGCCTTCCACTTGATAGGCATTTTAGCTATTTTCCCGAGTCACCAGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATAAAAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTGCCAGGAAATACTGCTGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCGCTGCCTAGGCCTGGTTCCTTGTTTCATGGAAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGACAAAGTAGACTACCTGAAAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGCTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAGTTAGAGAAAGATTAA 2562 0.4239 MDKNYGDSSSAHAAAGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKLDLTDSENYGQPVDDNLLTLEKVHKEDEGRDPFDDFEATAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDCEPQESLNIGISKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTTNHLSGLAAILSPHAATSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNANASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGIQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNKSEGNFMMNMGGHASIGAGLPGNTAAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRLPENAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium197g00002 853 CDD RRM1_MEI2_like 198 274 IPR034453 -
Vium197g00002 853 CDD RRM3_MEI2_like 698 783 IPR034454 -
Vium197g00002 853 MobiDBLite consensus disorder prediction 1 22 - -
Vium197g00002 853 Gene3D - 283 381 IPR012677 -
Vium197g00002 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Vium197g00002 853 MobiDBLite consensus disorder prediction 7 22 - -
Vium197g00002 853 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Vium197g00002 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Vium197g00002 853 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Vium197g00002 853 SMART rrm1_1 697 773 IPR000504 GO:0003723
Vium197g00002 853 SMART rrm1_1 285 353 IPR000504 GO:0003723
Vium197g00002 853 SMART rrm1_1 200 268 IPR000504 GO:0003723
Vium197g00002 853 MobiDBLite consensus disorder prediction 400 423 - -
Vium197g00002 853 SUPERFAMILY RNA-binding domain, RBD 697 782 IPR035979 GO:0003676
Vium197g00002 853 CDD RRM2_MEI2_like 283 353 - -
Vium197g00002 853 PANTHER RNA RECOGNITION MOTIF-CONTAINING 29 826 - -
Vium197g00002 853 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Vium197g00002 853 Gene3D - 188 282 IPR012677 -
Vium197g00002 853 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Vium197g00002 853 MobiDBLite consensus disorder prediction 479 501 - -
Vium197g00002 853 Pfam RNA recognition motif 2 695 791 IPR007201 -
Vium197g00002 853 FunFam Protein MEI2-like 1 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium197g00002 Vium-Chr197 4026 13741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium197g00002 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 2.99e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium197g00002 - - gmx:100812324 1528.84