Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium197g00002 | ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCGCAGGTTCATCTGAGACTTCCTTGCTTAATGCTCGGAAAAAAGTTGCAAGCAGTGCATGGGGAATACCTCGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCGCATGAAAAGTTAGATTTGACTGATTCTGAAAATTATGGCCAACCAGTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGATGAGGGACGTGATCCTTTTGATGATTTTGAAGCCACTGCAATAGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTATTTGTCAATGGAGGAGAATTTGAGATGGATTGTGAACCCCAAGAGAGCCTTAACATTGGCATATCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATAGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCAAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGGACTTTTAGACATCAAGTGGGTTCACCCGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCACCAACCATTTGTCTGGATTGGCGGCAATTCTTTCCCCACATGCAGCAACCTCTCCCAAGATTGCTCCAATTGGCAAGGACCCTGGAAGGACTGCAAATCAGCTGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAATGCAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCTGGAATCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCATCACGTTGGATCTGCTCCATCAGGCCTTCCACTTGATAGGCATTTTAGCTATTTTCCCGAGTCACCAGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATAAAAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTGCCAGGAAATACTGCTGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCGCTGCCTAGGCCTGGTTCCTTGTTTCATGGAAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGACAAAGTAGACTACCTGAAAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGCTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAGTTAGAGAAAGATTAA | 2562 | 0.4239 | MDKNYGDSSSAHAAAGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKLDLTDSENYGQPVDDNLLTLEKVHKEDEGRDPFDDFEATAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDCEPQESLNIGISKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTTNHLSGLAAILSPHAATSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNANASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGIQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNKSEGNFMMNMGGHASIGAGLPGNTAAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRLPENAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD | 853 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium197g00002 | 853 | CDD | RRM1_MEI2_like | 198 | 274 | IPR034453 | - | |
Vium197g00002 | 853 | CDD | RRM3_MEI2_like | 698 | 783 | IPR034454 | - | |
Vium197g00002 | 853 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Vium197g00002 | 853 | Gene3D | - | 283 | 381 | IPR012677 | - | |
Vium197g00002 | 853 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 199 | 272 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
Vium197g00002 | 853 | SUPERFAMILY | RNA-binding domain, RBD | 196 | 359 | IPR035979 | GO:0003676 | |
Vium197g00002 | 853 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 201 | 265 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 351 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | SMART | rrm1_1 | 697 | 773 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | SMART | rrm1_1 | 285 | 353 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | SMART | rrm1_1 | 200 | 268 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | MobiDBLite | consensus disorder prediction | 400 | 423 | - | - | |
Vium197g00002 | 853 | SUPERFAMILY | RNA-binding domain, RBD | 697 | 782 | IPR035979 | GO:0003676 | |
Vium197g00002 | 853 | CDD | RRM2_MEI2_like | 283 | 353 | - | - | |
Vium197g00002 | 853 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 29 | 826 | - | - | |
Vium197g00002 | 853 | FunFam | MEI2-like protein 5 isoform 2 | 188 | 282 | - | - | |
Vium197g00002 | 853 | Gene3D | - | 188 | 282 | IPR012677 | - | |
Vium197g00002 | 853 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 357 | IPR000504 | GO:0003723 | |
Vium197g00002 | 853 | MobiDBLite | consensus disorder prediction | 479 | 501 | - | - | |
Vium197g00002 | 853 | Pfam | RNA recognition motif 2 | 695 | 791 | IPR007201 | - | |
Vium197g00002 | 853 | FunFam | Protein MEI2-like 1 | 283 | 378 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium197g00002 | Vium-Chr197 | 4026 | 13741 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium197g00002 | 194 | 370 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 25.758 | 2.99e-11 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium197g00002 | - | - | gmx:100812324 | 1528.84 |