Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium197g00001 ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCGCAGGTTCATCTGAGACTTCCTTGCTTAATGCTCGGAAAAAAGTTGCAAGCAGTGCATGGGGAATACCTCGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCGCATGAAAAGTTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGATGAGGGACGTGATCCTTTTGATGATTTTGAAGCCACTGCAATAGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTATTTGTCAATGGAGGAGAATTTGAGATGGATTGTGAACCCCAAGAGAGCCTTAACATTGGCATATCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATAGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCAAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGGACTTTTAGACATCAAGTGGGTTCACCCGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCACCAACCATTTGTCTGGATTGGCGGCAATTCTTTCCCCACATGCAGCAACCTCTCCCAAGATTGCTCCAATTGGCAAGGACCCTGGAAGGACTGCAAATCAGCTGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAATGCAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCTGGAATCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCATCACGTTGGATCTGCTCCATCAGGCCTTCCACTTGATAGGCATTTTAGCTATTTTCCCGAGTCACCAGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATAAAAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTGCCAGGAAATACTGCTGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCGCTGCCTAGGCCTGGTTCCTTGTTTCATGGAAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGACAAAGTAGACTACCTGAAAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGCTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAGTTAGAGAAAGATTAA 2526 0.4248 MDKNYGDSSSAHAAAGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKFDDNLLTLEKVHKEDEGRDPFDDFEATAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDCEPQESLNIGISKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTTNHLSGLAAILSPHAATSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNANASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGIQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNKSEGNFMMNMGGHASIGAGLPGNTAAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRLPENAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD 841
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium197g00001 841 CDD RRM1_MEI2_like 186 262 IPR034453 -
Vium197g00001 841 SUPERFAMILY RNA-binding domain, RBD 184 347 IPR035979 GO:0003676
Vium197g00001 841 Gene3D - 176 270 IPR012677 -
Vium197g00001 841 CDD RRM3_MEI2_like 686 771 IPR034454 -
Vium197g00001 841 Gene3D - 271 369 IPR012677 -
Vium197g00001 841 FunFam Protein MEI2-like 1 271 366 - -
Vium197g00001 841 SUPERFAMILY RNA-binding domain, RBD 685 770 IPR035979 GO:0003676
Vium197g00001 841 FunFam MEI2-like protein 5 isoform 2 176 270 - -
Vium197g00001 841 PANTHER RNA RECOGNITION MOTIF-CONTAINING 29 814 - -
Vium197g00001 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 260 IPR000504 GO:0003723
Vium197g00001 841 SMART rrm1_1 685 761 IPR000504 GO:0003723
Vium197g00001 841 SMART rrm1_1 188 256 IPR000504 GO:0003723
Vium197g00001 841 SMART rrm1_1 273 341 IPR000504 GO:0003723
Vium197g00001 841 MobiDBLite consensus disorder prediction 388 411 - -
Vium197g00001 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 339 IPR000504 GO:0003723
Vium197g00001 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 253 IPR000504 GO:0003723
Vium197g00001 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 345 IPR000504 GO:0003723
Vium197g00001 841 CDD RRM2_MEI2_like 271 341 - -
Vium197g00001 841 Pfam RNA recognition motif 2 683 779 IPR007201 -
Vium197g00001 841 MobiDBLite consensus disorder prediction 467 489 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium197g00001 Vium-Chr197 4025 13741 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium197g00001 182 358 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 3.09e-11 65.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium197g00001 - - gmx:100812324 1493.4