Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium197g00001 | ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCGCAGGTTCATCTGAGACTTCCTTGCTTAATGCTCGGAAAAAAGTTGCAAGCAGTGCATGGGGAATACCTCGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCGCATGAAAAGTTTGATGATAACTTGCTAACATTAGAGAAAGTTCATAAAGAAGATGAGGGACGTGATCCTTTTGATGATTTTGAAGCCACTGCAATAGGGAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTATTTGTCAATGGAGGAGAATTTGAGATGGATTGTGAACCCCAAGAGAGCCTTAACATTGGCATATCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATAGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCAAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATAAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGGACTTTTAGACATCAAGTGGGTTCACCCGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGTCCCATTAATACCACCAACCATTTGTCTGGATTGGCGGCAATTCTTTCCCCACATGCAGCAACCTCTCCCAAGATTGCTCCAATTGGCAAGGACCCTGGAAGGACTGCAAATCAGCTGTTTGCAAACTCCGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAATGCAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCTGGAATCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGCTCCCATTCCCATCATCACGTTGGATCTGCTCCATCAGGCCTTCCACTTGATAGGCATTTTAGCTATTTTCCCGAGTCACCAGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATAAAAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTGCCAGGAAATACTGCTGCTGAAATTAGTTCTCCTAATTTCAGAATGATGTCGCTGCCTAGGCCTGGTTCCTTGTTTCATGGAAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGACAAAGTAGACTACCTGAAAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGCTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAGTTAGAGAAAGATTAA | 2526 | 0.4248 | MDKNYGDSSSAHAAAGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKFDDNLLTLEKVHKEDEGRDPFDDFEATAIGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDCEPQESLNIGISKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVEHNPLGSFSKSPGLGHASPINTTNHLSGLAAILSPHAATSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNANASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGIQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNKSEGNFMMNMGGHASIGAGLPGNTAAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRLPENAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD | 841 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium197g00001 | 841 | CDD | RRM1_MEI2_like | 186 | 262 | IPR034453 | - | |
Vium197g00001 | 841 | SUPERFAMILY | RNA-binding domain, RBD | 184 | 347 | IPR035979 | GO:0003676 | |
Vium197g00001 | 841 | Gene3D | - | 176 | 270 | IPR012677 | - | |
Vium197g00001 | 841 | CDD | RRM3_MEI2_like | 686 | 771 | IPR034454 | - | |
Vium197g00001 | 841 | Gene3D | - | 271 | 369 | IPR012677 | - | |
Vium197g00001 | 841 | FunFam | Protein MEI2-like 1 | 271 | 366 | - | - | |
Vium197g00001 | 841 | SUPERFAMILY | RNA-binding domain, RBD | 685 | 770 | IPR035979 | GO:0003676 | |
Vium197g00001 | 841 | FunFam | MEI2-like protein 5 isoform 2 | 176 | 270 | - | - | |
Vium197g00001 | 841 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 29 | 814 | - | - | |
Vium197g00001 | 841 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 260 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | SMART | rrm1_1 | 685 | 761 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | SMART | rrm1_1 | 188 | 256 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | SMART | rrm1_1 | 273 | 341 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | MobiDBLite | consensus disorder prediction | 388 | 411 | - | - | |
Vium197g00001 | 841 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 339 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 253 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 345 | IPR000504 | GO:0003723 | |
Vium197g00001 | 841 | CDD | RRM2_MEI2_like | 271 | 341 | - | - | |
Vium197g00001 | 841 | Pfam | RNA recognition motif 2 | 683 | 779 | IPR007201 | - | |
Vium197g00001 | 841 | MobiDBLite | consensus disorder prediction | 467 | 489 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium197g00001 | Vium-Chr197 | 4025 | 13741 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium197g00001 | 182 | 358 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 25.758 | 3.09e-11 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium197g00001 | - | - | gmx:100812324 | 1493.4 |