Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1979g00002 ATGTTAGAGTCTTTAGCTTGGTGCCAAAGCTTTAAGGGATATGACCTTACCAAACAGAAGAGTCCGGGTTGCTCTCATGCTATTTCACGAGTTTATAGAAATTCTATTTTTATGCTTTATTCTGTCAACAAGAAAGTGCCGGTACTGCCACATGGTGCTAGTCATTGGATATTTCATGGGAGTTCTGTGTCAGAAAATTTCTTTAAAAAGCCTCCTCTCTATGCTCCTTTAAGTTCTGGTTGGAAAGGTTTGTATAGGCCGCGTTGGGAAAGGCTGCAAACAAATGTAGCCTATGATGTTGCTGGAGCTGTTGATGTAATCAATGATTTAGGATTGGACACTCTTACTTTCTTGGCTGTGACCGTCATTATTGTGCCTATGTTCAAGTCACTGAAAGCCAGTCCTATACTTGGCTTCTTTTGTGCTGGTGTGGTACTCAATCAGTTTGGTTTAATTAGAAACCTTACAGATGTTAAAGTTTTATCCGAATGGGGGATTCTTTTCTTGCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTAAAAGCTCTTGCAAAGTATGCTTTTGGAATGGGATTGGCTCAGGTTTTACTGTCTACTTTAGCATTTACTGCTTTTGAGCTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGGTGAACATAAGGAGTGTCGATGAAGCTGTAGTGATTGGTGCTGCTTTGTCTTTGTCATCTTCTGCATTTGTTCTACAGCTTTTAGCAGAGAAAGGTGAGCTTCCAACAAGATTTGGTTCAGCAACTCTTGGAATACTTCTTCTGCAGGACTTAGCAGTTGTTCCTCTTTTAGTCATACTTCCTATACTAGAGAGCCAGAATATAACCGAGGGGAGTATTTGGCCTACACTTGCTCAAGAAAGTTTAAAAGCTTTAGGTGGATTGGGTCTTCTTTCTCTTGGGGCAAAGTACATTCTCAGAAGAGTTTTTGAGGTTGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACAATTGCTGGGACTTCTCTAGGCACACAGAATTTGGGCTTTAGTGACACGCTTGGGGCTTTTTTAGCTGGGGCTATTTTGGCAGAGACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGCTTGCTCCTTGGATTGTTTTTCCTAACTACGGGAACTTCAATTGACATGCAGCTCCTTTTACGAGAGTGGCCAAATGTACTTTCACTCTTGGGAGGTTTAATTGTTATAAAGACATTGATCATAACTGCAATTGGTCCTCGTGTTGGGCTTACTTTACAAGAAAGTGTAAGAATAGGATTGCTTCTATCCCAAGGAGGCGAATTTGGATTTGTTGTTTTCTCTTTAGCAAATAGGCTCGGGGTGCTTCCTCTTGAGCTCAACAAACTGCTCATAATTGTTGTTGTATTGTCGATGGCATTAACCCCATTTCTGAACGAAGCTGGAAGAAGGGCTGCTAGTTTTATAGAAGAAAAATCTGATACTGAGAATAATGAGAAAGCTTTGGAGACTGTTAACTTCGATGCTCGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGGCCAGGTCCTTGCCAATTTCCTGTCCAATCCATTAGCTTCAGGAGAAGGTGATGAAGTAGGATGGCCTTATGTAGCATTTGATGTGGACCCCAATGTAGTAAAGACAGCTAGAAAAATTGGCTTTCCTATAGTCTATGGGGATGGATCACGTCCTGATGTTCTTCAATCTGCTGGTGTCTCTTCCCCAAAAGCTTTTATGATTATGTACACTGGAAAGAAGAAGACAATTGATGCTGTTCAGAGGCTAAGATTGACATTTCCCACGTGA 1899 0.4144 MLESLAWCQSFKGYDLTKQKSPGCSHAISRVYRNSIFMLYSVNKKVPVLPHGASHWIFHGSSVSENFFKKPPLYAPLSSGWKGLYRPRWERLQTNVAYDVAGAVDVINDLGLDTLTFLAVTVIIVPMFKSLKASPILGFFCAGVVLNQFGLIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMGLAQVLLSTLAFTAFELPPNGAVGTKILEFLFHSRPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDLAVVPLLVILPILESQNITEGSIWPTLAQESLKALGGLGLLSLGAKYILRRVFEVVADTRSSEAFVALCLLTIAGTSLGTQNLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFLTTGTSIDMQLLLREWPNVLSLLGGLIVIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEEKSDTENNEKALETVNFDAREPVVILGFGQMGQVLANFLSNPLASGEGDEVGWPYVAFDVDPNVVKTARKIGFPIVYGDGSRPDVLQSAGVSSPKAFMIMYTGKKKTIDAVQRLRLTFPT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1979g00002 632 Gene3D - 534 632 - -
Vium1979g00002 632 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 97 631 - -
Vium1979g00002 632 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 533 632 IPR036291 -
Vium1979g00002 632 Gene3D - 109 508 IPR038770 -
Vium1979g00002 632 Pfam TrkA-N domain 535 631 IPR003148 GO:0006813
Vium1979g00002 632 FunFam K(+) efflux antiporter 3, chloroplastic 109 508 - -
Vium1979g00002 632 ProSiteProfiles RCK N-terminal domain profile. 534 632 IPR003148 GO:0006813
Vium1979g00002 632 Pfam Sodium/hydrogen exchanger family 117 501 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1979g00002 Vium-Chr1979 9644 31008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1979g00002 1 631 Inorganic Solute Cotransporters AT4G04850 74.491 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1979g00002 K03455 - gmx:100798214 1086.63