Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1978g00001 ATGCTAAAAGCACCTCTCTGTTATGTGACCCTAAAATCCCCACAGTTTGCAGCCATGGCGGGAGCTACAGGAAGAACCCTCTTCACCTTCTCCCTTTCTTCCTCTTCTTCTTATTCTTCCTTCACGCGCTTCCTCGCCAAGCGCGTCCCACTACGCAAAGCCCTCCCTCTTCTCCCCCGCTTCCGCCCACTCTGCTCCGTCGCTGCTGCGCCGGAAAGCGCCGACGCGAAGCATTCTTTACTCCTCGAGAGGCTCCGGGCGCGACACCTCAGGGATGCCGCGAGAATCGCCCCCGAACCGAGGAAGAAGGCCAGGGGCGCCGCCGTTGCGGAGGCTGAGAAAGAGAAGGCGAAGAAGGAGAAGAAGGTGGTTGCCAGTTTCGAGGAGTTGGGAGTGAGTGAAGAAGTTATGGCGGCGGTTAGTGAAATGGGGATTGATGTACCCACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCCTACTTGCTTCCTCTTGTTCAGTTGCTACGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCGCGAGCTGTTGTATTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTAGCAAAATCGATAAGCCATCATGCCCGATTTAGGTGTACCATGGTAAGTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGGTTCTTCAGCATATTGAGGAGGGAAACATGGTGTATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAGTTTCTGGGCCCATTAAAAAATCGCGCTTCAAAACCTGATGGCCTTGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTTCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTGCATAAGAAGATTTCTTCAGCTCGTCATGATTTTATTAGACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTGCAGGTATAG 1128 0.5053 MLKAPLCYVTLKSPQFAAMAGATGRTLFTFSLSSSSSYSSFTRFLAKRVPLRKALPLLPRFRPLCSVAAAPESADAKHSLLLERLRARHLRDAARIAPEPRKKARGAAVAEAEKEKAKKEKKVVASFEELGVSEEVMAAVSEMGIDVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIRLSGSENKLEALLQV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1978g00001 375 SMART ultradead3 144 353 IPR014001 -
Vium1978g00001 375 Coils Coil 109 129 - -
Vium1978g00001 375 CDD DEADc 136 335 - -
Vium1978g00001 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 338 IPR027417 -
Vium1978g00001 375 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vium1978g00001 375 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 343 IPR014001 -
Vium1978g00001 375 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 79 375 - -
Vium1978g00001 375 Gene3D - 92 344 IPR027417 -
Vium1978g00001 375 Pfam DEAD/DEAH box helicase 149 332 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1978g00001 Vium-Chr1978 1479 4911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1978g00001 124 325 Eukaryotic Initiation Factors Gene Family AT3G19760 29.756 2.20e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1978g00001 - - gmx:100805709 572.007