Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1972g00005 ATGAAGAAGATGTGGGTTTGGCATCATCCATTGTTTCTTCTGTACATTCTTTGTGGCCTCTGTTTTTCTCTGCAGTTCACAAGGGTTTATGCAGATTCAAGTGCTGGAAGAATTTTGAATCAGGTGGATGGTGATCATCAAATACATTGCTCTAGAGAAAGAAGTAGAACAGCTTGGAAGATCATTCAGGAGTATTTGATGCCCTTTGTGGAGAAAGAAAAATATCATATCCCAAAACGGTGTAGGTTTCACCCTGACAATGACATATACAGAGATCAGGAGCAGCACAAGTTTCATATAGATATAAATGAATGGCAATGTGGGTACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAATGAAAGCCAGTGCTTAGCAGATGTATGTGGTGCACTGCACTGTGACCATGAAGTGAATTCTGGTTCAAAAAAATCAAAGTGCAATCCTGCCGCTGCTGCTAGAAATAAACATCTATGTGAGAGCTTAGCCGACAGTTGTTTTCCAATTAATGAGGGTCCTGTGGCAAGCCGACTTCATGAATTGTTTTTGCACCAATTCTGTGAGGCACACAGCTGCATTGGAAGTAGGCAACCTTTCTCAAGAGGGCGCAGGAAGAAGACAAATGTGTTCTACATCTTTGTGTCTATTTTGCTTGTGATACTACTGCTACTATACTATCTCTACGTTTACTTATATCAGAGAGGAATGAAAAAGGAAACCCAAGTGCTGAAGCGCATCTCACAAACCGGTAGAAAGAAAAAGCCGTCCTAA 816 0.402 MKKMWVWHHPLFLLYILCGLCFSLQFTRVYADSSAGRILNQVDGDHQIHCSRERSRTAWKIIQEYLMPFVEKEKYHIPKRCRFHPDNDIYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDQHFDNRHSNLLNLNESQCLADVCGALHCDHEVNSGSKKSKCNPAAAARNKHLCESLADSCFPINEGPVASRLHELFLHQFCEAHSCIGSRQPFSRGRRKKTNVFYIFVSILLVILLLLYYLYVYLYQRGMKKETQVLKRISQTGRKKKPS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1972g00005 271 ProSitePatterns Zinc finger C2H2 type domain signature. 107 128 IPR013087 -
Vium1972g00005 271 PANTHER ZINC FINGER PROTEIN-RELATED 22 270 - -
Vium1972g00005 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1972g00005 Vium-Chr1972 22037 26056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1972g00005 30 271 C2H2 Transcription Factor Family AT5G63280 59.592 1.55e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1972g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1972g00005 - - gmx:100527694 468.388