Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1966g00003 ATGGCAATCTCTGTGGATCCACTTTTCTTTTACATCCCAGTGATTGATGACAGTAAAAAATGCCTTGATTTGGATGGAACACTCAAGATCACTGCCAGTGTTCTCCGTACATTCTTTGATCTTCTCTACATTCTTCACATTGTCTTTCAGTTTCGAACCGGGTTTATTGCCCCTTCCTCTCGTGTGTTTGGAAGGGGTGAGCTTGTTGATGACCCTTCAGCCATAGTGATGAAATACTTAAGTTCTTACTTCACCATTGACATTCTGTCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATCATATCCCCAACATGCTCAGCTCCATACGTGGGAAAGGATTTGTTGAAGTATACAGTAATAGCCCAGTACGTGCCAAGGCTTCTGCGGATCTACCCTTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCAGTTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAAGGGTGAGGTGCTGGCGCAGGCGGCTGAAGAATAATATTACTTCCTATCATGAATCCTACCTTAGCTGTGGATCTGACAATTCTACTATTCAATCACTTCTCCATCATTCTTGCCCTGTCACTGATCCTGAAAATATTATAGACCTGGAAGCTTTCAATTTTGGAATTTTCATAGAAGCTCTAAAGTATCGAGTGGTAGAATCAAGTACTGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCAGTTGGGCAAGGTCTCGAGACAAGTACTTATGTAGGGGAGATAATCTTTGCTATCTCCATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTGCCTGATTTCCTGAAGCAAAGAATCAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTGATTCGCAACCTCCCCAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGTTTAGAACTACTTAAAAGAGTTCCAATGTTTGAGAGCATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAGAAGTTACATAGTCCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCAACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAATTCCTCTGAGCTCAAGGCTGGTGATTTCTGCGGAGAAGAGCTTCTGACATGGGCCTTGGACCCCAACTACTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAAAGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGTTCTATTCCTTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCATGGCGTAGATATAGAAAAAAGAAGGCAGAGAGGTTGTTACGTGAAGCAGAAGAAAGGATACAAAATCTGGAAAACGAAGAAGGGTCTTCACCTAGCTTTGCTGCCACTGTATATGCATCAAAGTTTGCATCAAATGCATTGCGCCACCTCCGAAGTGGTAAACGCACCAGAGTGCCACAGCCACAGAAATTGCTACCCCTGATGCCTCAGAAGCCTTCTGAGCCAGATTTCACTGCTCTGAAAAACTAG 1851 0.4268 MAISVDPLFFYIPVIDDSKKCLDLDGTLKITASVLRTFFDLLYILHIVFQFRTGFIAPSSRVFGRGELVDDPSAIVMKYLSSYFTIDILSIIPLPQMVILAMIISPTCSAPYVGKDLLKYTVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAVYNLFLYMLASHVVGAFWYLFSVESRVRCWRRRLKNNITSYHESYLSCGSDNSTIQSLLHHSCPVTDPENIIDLEAFNFGIFIEALKYRVVESSTDFHHKFFYCFWWGLRSVSSVGQGLETSTYVGEIIFAISIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLELLKRVPMFESMDNQLLDALCDKLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKSVASQFRRLINNKQLQHTFRFYSLQWKTWGACFIQAAWRRYRKKKAERLLREAEERIQNLENEEGSSPSFAATVYASKFASNALRHLRSGKRTRVPQPQKLLPLMPQKPSEPDFTALKN 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1966g00003 616 FunFam Cyclic nucleotide-gated ion channel 1 385 503 - -
Vium1966g00003 616 Pfam Cyclic nucleotide-binding domain 408 501 IPR000595 -
Vium1966g00003 616 SUPERFAMILY Voltage-gated potassium channels 7 309 - -
Vium1966g00003 616 Pfam Ion transport protein 26 315 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1966g00003 616 Gene3D - 14 311 - -
Vium1966g00003 616 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 611 - -
Vium1966g00003 616 SMART cnmp_10 387 518 IPR000595 -
Vium1966g00003 616 Gene3D Helix hairpin bin 314 378 - -
Vium1966g00003 616 MobiDBLite consensus disorder prediction 584 616 - -
Vium1966g00003 616 SUPERFAMILY cAMP-binding domain-like 316 505 IPR018490 -
Vium1966g00003 616 Gene3D Jelly Rolls 385 505 IPR014710 -
Vium1966g00003 616 ProSiteProfiles cAMP/cGMP binding motif profile. 387 471 IPR000595 -
Vium1966g00003 616 FunFam Cyclic nucleotide-gated ion channel 1 314 378 - -
Vium1966g00003 616 Coils Coil 540 563 - -
Vium1966g00003 616 CDD CAP_ED 387 519 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1966g00003 Vium-Chr1966 7826 12254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1966g00003 1 613 Ion Channels AT1G01340 64.630 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1966g00003 K05391 - gmx:100795201 1072.77