Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1966g00001 ATGACTACAAAGGGACAGAGATTTGTTAGGTTTAAGGATTGGAAGTCATTTTCATCTTCAAGTATCGAGCACAATGATTCCACTAGTGACGGATTTCACAAGAAAAAAGTTCAATCATGCGAAAGCTCTGTCAGTGATGAATCAATCAGAAATTTGTCCTGTAGGAGGCATGTTCTTCATCCACAGGGGGCAACACTTCAAAAGTGGAACAAAATTTTTGTAATCACAAGTGTGATGGCAATCTCTGTGGATCCACTTTTCTTTTACATCCCAGTGATTGATGACAGTAAAAAATGCCTTGATTTGGATGGAACACTCAAGATCACTGCCAGTGTTCTCCGTACATTCTTTGATCTTCTCTACATTCTTCACATTGTCTTTCAGTTTCGAACCGGGTTTATTGCCCCTTCCTCTCGTGTGTTTGGAAGGGGTGAGCTTGTTGATGACCCTTCAGCCATAGTGATGAAATACTTAAGTTCTTACTTCACCATTGACATTCTGTCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATCATATCCCCAACATGCTCAGCTCCATACGTGGGAAAGGATTTGTTGAAGTATACAGTAATAGCCCAGTACGTGCCAAGGCTTCTGCGGATCTACCCTTTATTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCAGTTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAAGGGTGAGGTGCTGGCGCAGGCGGCTGAAGAATAATATTACTTCCTATCATGAATCCTACCTTAGCTGTGGATCTGACAATTCTACTATTCAATCACTTCTCCATCATTCTTGCCCTGTCACTGATCCTGAAAATATTATAGACCTGGAAGCTTTCAATTTTGGAATTTTCATAGAAGCTCTAAAGTATCGAGTGGTAGAATCAAGTACTGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCAGTTGGGCAAGGTCTCGAGACAAGTACTTATGTAGGGGAGATAATCTTTGCTATCTCCATTGCTGTCTTTGGATTGGTTCTATTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTGCCTGATTTCCTGAAGCAAAGAATCAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTGATTCGCAACCTCCCCAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGTTTAGAACTACTTAAAAGAGTTCCAATGTTTGAGAGCATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAGAAGTTACATAGTCCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCAACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAATTCCTCTGAGCTCAAGGCTGGTGATTTCTGCGGAGAAGAGCTTCTGACATGGGCCTTGGACCCCAACTACTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAAAGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGTTCTATTCCTTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCATGGCGTAGATATAGAAAAAAGAAGGCAGAGAGGTTGTTACGTGAAGCAGAAGAAAGGATACAAAATCTGGAAAACGAAGAAGGGTCTTCACCTAGCTTTGCTGCCACTGTATATGCATCAAAGTTTGCATCAAATGCATTGCGCCACCTCCGAAGTGGTAAACGCACCAGAGTGCCACAGCCACAGAAATTGCTACCCCTGATGCCTCAGAAGCCTTCTGAGCCAGATTTCACTGCTCTGAAAAACTAG 2085 0.4221 MTTKGQRFVRFKDWKSFSSSSIEHNDSTSDGFHKKKVQSCESSVSDESIRNLSCRRHVLHPQGATLQKWNKIFVITSVMAISVDPLFFYIPVIDDSKKCLDLDGTLKITASVLRTFFDLLYILHIVFQFRTGFIAPSSRVFGRGELVDDPSAIVMKYLSSYFTIDILSIIPLPQMVILAMIISPTCSAPYVGKDLLKYTVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAVYNLFLYMLASHVVGAFWYLFSVESRVRCWRRRLKNNITSYHESYLSCGSDNSTIQSLLHHSCPVTDPENIIDLEAFNFGIFIEALKYRVVESSTDFHHKFFYCFWWGLRSVSSVGQGLETSTYVGEIIFAISIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLELLKRVPMFESMDNQLLDALCDKLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKSVASQFRRLINNKQLQHTFRFYSLQWKTWGACFIQAAWRRYRKKKAERLLREAEERIQNLENEEGSSPSFAATVYASKFASNALRHLRSGKRTRVPQPQKLLPLMPQKPSEPDFTALKN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1966g00001 694 MobiDBLite consensus disorder prediction 662 694 - -
Vium1966g00001 694 Gene3D - 72 389 - -
Vium1966g00001 694 Pfam Ion transport protein 69 393 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1966g00001 694 Gene3D Helix hairpin bin 392 456 - -
Vium1966g00001 694 SMART cnmp_10 465 596 IPR000595 -
Vium1966g00001 694 Coils Coil 618 641 - -
Vium1966g00001 694 ProSiteProfiles cAMP/cGMP binding motif profile. 465 549 IPR000595 -
Vium1966g00001 694 Pfam Cyclic nucleotide-binding domain 486 579 IPR000595 -
Vium1966g00001 694 CDD CAP_ED 465 597 IPR000595 -
Vium1966g00001 694 SUPERFAMILY cAMP-binding domain-like 394 583 IPR018490 -
Vium1966g00001 694 FunFam Cyclic nucleotide-gated ion channel 1 463 581 - -
Vium1966g00001 694 FunFam Cyclic nucleotide-gated ion channel 1 392 456 - -
Vium1966g00001 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 39 689 - -
Vium1966g00001 694 SUPERFAMILY Voltage-gated potassium channels 61 387 - -
Vium1966g00001 694 Gene3D Jelly Rolls 463 583 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1966g00001 Vium-Chr1966 6565 12254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1966g00001 1 691 Ion Channels AT5G53130 60.278 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1966g00001 K05391 - gmx:100795201 1193.72