Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1965g00002 ATGGCCGCTTCCACCATGGCTCTCTCTTCGCCATCATTGGCTGGTCAAGCCATGAAGCTGTCTCCTTCCACCCCGGACCTCTCCGGTGGAAGGATTTCGATGAGAAAGACGGCCTCCAAGTCGGTTTCCTCTGGAAGCCCATGGTACGGCCCAGACCGTGTGAAGTACCTGGGCCCATTCTCGGGTGAGGCTCCTTCTTACCTGACGGGAGAATTCCCAGGTGACTATGGGTGGGACACTGCCGGGCTTTCAGCTGACCCGGAGACATTTGCTCGAAACCGTGAACTGGAAGTGATCCACTCTCGATGGGCGATGTTGGGGGCTTTGGGGTGTGTGTTCCCTGAACTGTTGGCCCGGAACGGTGTGAAGTTCGGGGAGGCGGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGAGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATATTGATGGGTGCAGTGGAGGGTTACCGCATTGCCGGTGGGCCTTTGGGTGAGGTGACGGACCCAATCTACCCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTGGCTGAGTTGAAGGTGAAAGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGTTTCTTCGTTCAAGCCATTGTCACTGGCAAGGGACCTTTGGAGAACCTCGCCGATCACCTTGCCGACCCCGTCAACAACAACGCCTGGGCCTACGCCACCAACTTTGTCCCTGGAAAGTGA 795 0.5686 MAASTMALSSPSLAGQAMKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFREGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1965g00002 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vium1965g00002 264 MobiDBLite consensus disorder prediction 1 45 - -
Vium1965g00002 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Vium1965g00002 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vium1965g00002 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Vium1965g00002 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1965g00002 Vium-Chr1965 10740 11625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1965g00002 1 264 Chloroplast and Mitochondria Gene Families AT2G34430 87.594 1.28e-170 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1965g00002 K08912 - ccaj:109815895 524.628