Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1963g00004 ATGAGAGAACAAGCAGTCTTTCATCTTGAGGAACATGGTCAGACAGAGAGGTCCCAATGGGTGCTTGATTCTCCCAATCCACCCCCTCTTTGGGAAAAAATATTTACTTCTGTCAAAGAAACCATTCTGCCTCATGGGAACAAATTCTGCTTCTCATCCAAGAGGAAAACTTCCCGTGGACGTGCTTTCTCATGCTTTCAGAATCTGTTCCCTATCATTACTTGGTTAAGAGATTACAAAGCCTCTGAGTTCAAAGATGATCTCTTGGCTGGTTTAACTCTTGCCAGCCTCAGCATACCTCAGAGCATAGGGTATGCTACGTTAGCAAAAGTTGCTCCTGAATATGGCCTGTATACTAGTGTTATTCCTCCTCTTATTTATGCTGTGATGGGGAGCTCAAGAGAAATTGCAATTGGACCTGTGGCTGTGGTGTCAATGCTGTTATCTTCTCTGGTTCCAAAAGTGGAAGATCCTGTTGCCAATGCTCATGCCTACAGAAATCTTGTCTTTACTGTGACTTTCTTCACTGGAATTTTCCAAACTGCATTTGGTGTTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCGCATGCTGCCTTAGTTGGATTCATGGCAGGCGCTGCCGTCATTATAGGTCTTCAGCAGCTCAAAGGTTTGCTGGGGATTAGTCACTTTACCTCCAAAACAGATGTAGTATCAGTTTTGGCATCTGTTTATAAGTCACTACATCATCAAATTGCCTCGGGAGAAAAATGGAATCCTCTGAATTTTGTCCTCGGATGTTCATTCTTGATTTTCATTCTAATTACCCGTTTTATTGGCAGAAGAAACAGAAAGTTTTTCTGGTTGCCTGCCGTTGCTCCCCTTCTATCAGTTATACTATCAACTTTGATCGTATATATGTCTAGAGCTGATAAACATGGTGTTAATATAATAAAGCATGTTAAAGGAGGTCTGAATCCAAGTTCACTGCACCAGTTGCAACTCCATGGTCCACATGTTGGACAAGCAGCTAAAATTGGTTTGATTTGTGCAGTTATAGCACTGACTGAAGCTATAGCGGTTGGTCGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGAAACAAGGAAATGTTATCAATGGGCTTCATGAACATTGCAGGATCTTTGACTTCATGCTATGTAGCAACGGGTTCTTTCTCAAGAACTGCAGTGAATTTTAGTGCTGGATGTCAAACAGCAGTGTCAAATATTGTGATGGCTGTTACAGTGTTTTTGTCCCTGGAATTGTTTACAAGGCTCTTATACTACACCCCTGTGGCTATCCTTGCCTCTATCATTCTCTCTGCTCTTCCTGGATTAATTGACCTAAGTGAGGCTTGCTATATTTGGAAGGTTGACAAATTGGACTTTCTTGCCTGTATTGGTGCATTTCTTGGGGTCTTGTTTGCAACAGTAGAGATTGGCCTTCTTGTTGCAGTGATAATTTCGTTTGCAAAGATACTGATTCAATCAATTCGACCAGGAATAGAAGTTCTGGGTAGAGTTCCAAGAACAGAAGCCTTCTGTGATGTTACTCAATATCCCATGGCCATAAGCACTCAAGGCATCACAGTGATTCGCATAAGTTCTGGCTCACTCTGCTTTGCAAATGCTAATTTTGTCAGAGAAAGAATACTCAAGTGGGTTTCGCAAGATGAAGATGACCCTAAAGAAGCCACCAAGGGTCGAGTCCAAGCAGTAATTCTGGACATGACTAACCTGATGAATGTTGACACTTCTGGAATTCTAGCACTTGAGGAACTGCACAAGAGATTGCTTTCCCGTGGAGTAGAATTAGCTATGGTGAATCCAAGGTGGCTAGTAATCCACAAGCTTAAGCTGGCACACTTTGTAGACAAGATTGGAAAAGAATGGGTTTTCCTTACTGTCGGAGAAGCCGTAGATGCATGCCTTTCTGCCAAAATTGCAAGAGCTTGA 1965 0.4204 MREQAVFHLEEHGQTERSQWVLDSPNPPPLWEKIFTSVKETILPHGNKFCFSSKRKTSRGRAFSCFQNLFPIITWLRDYKASEFKDDLLAGLTLASLSIPQSIGYATLAKVAPEYGLYTSVIPPLIYAVMGSSREIAIGPVAVVSMLLSSLVPKVEDPVANAHAYRNLVFTVTFFTGIFQTAFGVFRLGFLVDFLSHAALVGFMAGAAVIIGLQQLKGLLGISHFTSKTDVVSVLASVYKSLHHQIASGEKWNPLNFVLGCSFLIFILITRFIGRRNRKFFWLPAVAPLLSVILSTLIVYMSRADKHGVNIIKHVKGGLNPSSLHQLQLHGPHVGQAAKIGLICAVIALTEAIAVGRSFASIKGYHLDGNKEMLSMGFMNIAGSLTSCYVATGSFSRTAVNFSAGCQTAVSNIVMAVTVFLSLELFTRLLYYTPVAILASIILSALPGLIDLSEACYIWKVDKLDFLACIGAFLGVLFATVEIGLLVAVIISFAKILIQSIRPGIEVLGRVPRTEAFCDVTQYPMAISTQGITVIRISSGSLCFANANFVRERILKWVSQDEDDPKEATKGRVQAVILDMTNLMNVDTSGILALEELHKRLLSRGVELAMVNPRWLVIHKLKLAHFVDKIGKEWVFLTVGEAVDACLSAKIARA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1963g00004 654 FunFam Sulfate transporter 31 502 649 - -
Vium1963g00004 654 NCBIfam sulfate permease 71 642 IPR001902 GO:0016020|GO:0055085
Vium1963g00004 654 PANTHER SULFATE TRANSPORTER 55 647 IPR001902 GO:0016020|GO:0055085
Vium1963g00004 654 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
Vium1963g00004 654 CDD STAS_SulP_like_sulfate_transporter 523 639 - -
Vium1963g00004 654 Pfam Sulfate permease family 84 470 IPR011547 GO:0016020
Vium1963g00004 654 Pfam STAS domain 523 642 IPR002645 -
Vium1963g00004 654 SUPERFAMILY SpoIIaa-like 530 646 IPR036513 -
Vium1963g00004 654 ProSiteProfiles STAS domain profile. 539 646 IPR002645 -
Vium1963g00004 654 Gene3D STAS domain 502 649 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1963g00004 Vium-Chr1963 82393 86798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1963g00004 12 651 Inorganic Solute Cotransporters AT5G10180 62.773 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1963g00004 K17469 - gmx:100776591 1210.28