Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1952g00016 ATGGAGCAGCAGGGCAGCAAGATGTACAACCTGTTCGTGAAACACTTGGATGGAAAAACCCTAACCCTCTTATTTCCCTCTCCGATCCTCTATGTGAGTTTCATCAAGGATCGCCTTTTCGAACTCACTGGAATTCCCGTGCAGCACCAGCGCCTTGTCACCGGCTTCCGACACCTCAACGACATAATCCAATGCTCCCCGGAAGATGGCAACGTGTTTCCGTCCGTGCGGCTGCTGCTGCGTCTCAAAGGCGGAAAGGGAGGCTTCGGGTCGCTTCTTCGTGGTGCCGCGACGAAGGCCGGGCAGAAAAAGACCAACAATTTCGACGCCTGTCGGGACATGAGTGGTCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTAGAGGAGTGGAAGGCCGGAGAAGAGGAGAGAAGGCTCGAGAAGGTGGCTGAGGAGTTTCTCAAGAAGCAAATGAAGAAGGGTAAGGGTAAGGGAAAGGCTCAAGGGGATAGCGAAGCTCACAAATACGTGGAGAAATATCGGGTGGAATCTGAGCGTTGCGTTGCGGAGGTTGCCTTGTCCGTTAAGGAGGCTCTCACTGCCAAACGCAAGATCCCTTCACAACCCCACCACGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTATAGTGATGATTCTGATGTAGAGGGGGAAATGGAGAAATCTGATTTATTAAATGATCACAATGAGTCTGATTCAACTAAGGCTGAGGGCAGTCTGGGTTCGGTGGCTGGCGGAGGAGGCGCCTCTGGTTCTGCCTCGTGTGAAAGTGGCTCTGAGGAAGAGAAGGAAACTGTTGTACAAGGAAACGTGGGATCTGTTGGGTTGCTGAGTGATGAAAGTATTCAGCCCATGGACAAGCCTGTGATAAGCAATGAGGCTACTGCAATGCCAAATGAGTCAGTGGTTGCTGCACTTATTGTGGAAGAAGATGGACATCAGGATTGCCAAGGAGATGTGTCTGAAAAGTTTGATGGTGCTGTGAATCAGGTCTCAAATATTACAGGCTTTGAAATTGTGGCCGCTGACAACTATAATAATGATATGGAAATTGATGGATCACTTGAGCTTGAAGCAGCAGTCAATGAAGAGAGCTCGCCAAGCACTAGTGTTCCCGCAATGGATGAGCCCCTTAATTTTGATGCCTTTAATTCCTCTTCCCAACTAGAGGTTATTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGGGCGGCCAGGCTGTTTCTTCTAAAATCCACTCCTCTGGATAAACTTCCAAAGAAGCTCTTCGCCAAGAAGTAA 1368 0.4934 MEQQGSKMYNLFVKHLDGKTLTLLFPSPILYVSFIKDRLFELTGIPVQHQRLVTGFRHLNDIIQCSPEDGNVFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEEFLKKQMKKGKGKGKAQGDSEAHKYVEKYRVESERCVAEVALSVKEALTAKRKIPSQPHHDAKKLKIWMGKRKLNESDSDYSDDSDVEGEMEKSDLLNDHNESDSTKAEGSLGSVAGGGGASGSASCESGSEEEKETVVQGNVGSVGLLSDESIQPMDKPVISNEATAMPNESVVAALIVEEDGHQDCQGDVSEKFDGAVNQVSNITGFEIVAADNYNNDMEIDGSLELEAAVNEESSPSTSVPAMDEPLNFDAFNSSSQLEVIGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLFAKK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1952g00016 455 MobiDBLite consensus disorder prediction 236 251 - -
Vium1952g00016 455 MobiDBLite consensus disorder prediction 220 284 - -
Vium1952g00016 455 Pfam Silencing defective 2 N-terminal ubiquitin domain 69 153 IPR024974 -
Vium1952g00016 455 SUPERFAMILY Ubiquitin-like 4 83 IPR029071 -
Vium1952g00016 455 Pfam Replication stress response SDE2 C-terminal 380 454 IPR025086 -
Vium1952g00016 455 CDD Ubl_ubiquitin_like 11 73 - -
Vium1952g00016 455 Gene3D - 4 85 - -
Vium1952g00016 455 ProSiteProfiles Ubiquitin domain profile. 9 85 IPR000626 GO:0005515
Vium1952g00016 455 PANTHER SPLICING FACTOR SF3A-RELATED 10 454 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1952g00016 388 454 C2H2 Transcription Factor Family AT5G06160 46.269 2.81e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1952g00016 K25059 - gmx:100799364 647.506