Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1952g00015 ATGAACTTCTTGAAGGTCCTGTTCCACTGCTTCATACCTTTTGCTGTCGCATATGCATCATCTGATTGCAAATATTATTCTTGGTGCAGCGCCAACAACATCCTTATTCGTTTTCCCTTCCAAATAGAAGGTCAGCAACATCCTTATTGTGGCTATCCTGGTTTCAAACTATCTTGTTCCAATGATAGCAAAACAGTTATAACACTTCCTTACATGGGAAAGTTCTTTGTCCGCAACATTAACTACCTCAGACAACAGATGCAAGTGTACGACCCAGATGATTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCAGCTTCTCCCTTCATTGTAACTTCACAACGTAACTACACCCTCTTAAGCTGCCCAACTCGTCACACAGGGTCGCAGTTCATTCCCATTAACTGTCTTAGCAATTCAACGTCTTTTGTTTCAGCTATTCCTTCACTCAACTTCACTTCATTGCCCGAGTCTTGCCATGTTGTAAAGAAACTATCATTTCCAGTTGCATACCAGGAAAATTTCAGTGATGATGATCTCCTTCGTGGAGATCTTCTATTAACATGGTATTCACCTGACTGTAGATATTGCGAATCACAACAAGCTCTGTGCGGATTTGACGTGAGCATAAACAGTGGTCAAGTTGGTTGTTTCTTTGATGACCAAACGGCACGTCAAGATCATGGTCTTCGAGTTTTTGGAATCATCACATTATCCATCGTTGGACCAGCTATCGTGTGTGCCATTGCAATGACATGCTACGGCACCCTCAAGTACAGAAGAGGCAACACAGCGAGAATTGCTGCAGCACAGAGGTCTGCAGCAACTGAAATACCGGAATCTGGCACCGTTAGGATGGGTCTGGATGAGTCTACAATCGAGTCGTATCAGAAACTGGAGTTAGGGGAGAGCCGAAGAGTGCCAGGACCCAATGAGGGATGTTGCACCATATGTCTGTCAGAGTATAAAACCAAAGACACAATAAGATGCATTCCTGAATGCGCACATTGCTTCCATGCTCACTGCATCGATGAATGGCTTCGCATCAACACTACATGCCCTCTTTGCCGCAACTCTCCCTCTACAGTTCTAGCTATGTCCAGTGATCATTGA 1116 0.4418 MNFLKVLFHCFIPFAVAYASSDCKYYSWCSANNILIRFPFQIEGQQHPYCGYPGFKLSCSNDSKTVITLPYMGKFFVRNINYLRQQMQVYDPDDCLPKRLLSLNLSASPFIVTSQRNYTLLSCPTRHTGSQFIPINCLSNSTSFVSAIPSLNFTSLPESCHVVKKLSFPVAYQENFSDDDLLRGDLLLTWYSPDCRYCESQQALCGFDVSINSGQVGCFFDDQTARQDHGLRVFGIITLSIVGPAIVCAIAMTCYGTLKYRRGNTARIAAAQRSAATEIPESGTVRMGLDESTIESYQKLELGESRRVPGPNEGCCTICLSEYKTKDTIRCIPECAHCFHAHCIDEWLRINTTCPLCRNSPSTVLAMSSDH 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1952g00015 371 CDD RING-H2_EL5-like 315 358 - -
Vium1952g00015 371 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 362 IPR046948 -
Vium1952g00015 371 Pfam Wall-associated receptor kinase C-terminal 175 223 IPR032872 -
Vium1952g00015 371 Pfam Ring finger domain 316 358 IPR001841 -
Vium1952g00015 371 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Vium1952g00015 371 SMART ring_2 316 357 IPR001841 -
Vium1952g00015 371 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Vium1952g00015 371 SUPERFAMILY RING/U-box 315 361 - -
Vium1952g00015 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1952g00015 Vium-Chr1952 129258 132325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1952g00015 29 362 C3H Transcription Factor Family AT2G25410 41.349 3.16e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1952g00015 - - gmx:100799895 566.614