Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1952g00006 ATGGAATCAGAAATTCAAAGAAAAATAGAGGAAACATTGTTGGACATACTGAACAAATCCAACATGGAAGAAGCCACTGAGTTCGGCATACGACTCGCTGCCTCGGAGAGACTCGGTATCGACCTCTCCGACTCCATCAGCAAACACTTTGTTAGAAGCATAGTTGAGTCCTATCTTCTCTCCATTATGGCCAATGGAAAGGGGGAGAAGAAGGAAAATGTAGTCAGTGTCGAGGCCGAGGCCGATGAGGAGACGGAGGTGGTGAAACTGAAGAGGGAAGATCCTGAACGTATTATTTGTCATCTGTCCAACAGGAGGAACGTATCCGTGAAAGCATTCAGAGGGACGTCACTAGTCTCAATTAGGGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTGTAAAGGTATTAGTTTACCTTCTGAGCAATGGGCAATCTTCAAGGAAAGTGTTCCTGCAATAGAAGAAGCTATCTTAAAGATGGAAGGAAGGATGAGATCGGAGCTTAATGGTAAGCAACATGAAGATGTGTCAAAATCGGTTGACGCGGCTGCTCCTCTTGAGCCTGTTGCTCCTATTGAGCCTGTTGTCCCTGTTTCTCCACTTGAGCCTATAGCCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTTCCATTTTTGGGCTCAGCAGATGAAATCACTATTGAAACAATTAAAGATTGAACATGTACTAATTGAACCATGCCCGAATGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACATTGCTGCAGCCAAGGCTGCAGAAAGGAGATGGTTGAATGATGATGTAGTGTGTTGCCGCAATATCTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGTGAACAGAAAAATGAGCAGCAAGGAATTATGGGAAGAGCTAAAAATGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATAGTTGATGAAAAAACAGTGATTGGGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGAATATTCATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGGACTTCTGCATCAGGTTATCGCGTGAGGAATATTTACCTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGTGGAGTACAACGAGGGGGTGAACATTCTTACAGTATGGGATTTCACCCGGGCAGTAGAGGTGGTGGACAGAGGAGCGTTGACTATAAGCCACTAGGAATCTGGAGGAATAGGCCAGAAATCAATGCCAGGAGGAGCTTATCCTGTAATATATGTGGCAAGAGGGGACATCTTTCAAAAAATTGCTGGAGAAGAAATGACAGGCAAACTAATGAAAGGAGAGCAGAAGATGATGTCAGCACATCTACCACAGAAGTTGATACTCTGGCTTCTATTCCTACAGACAAATTGATTCTGGACGGTAGTGTGGGGTTGTGTAATGCCGTGGACAAAAGTATCAAATGA 1548 0.4296 MESEIQRKIEETLLDILNKSNMEEATEFGIRLAASERLGIDLSDSISKHFVRSIVESYLLSIMANGKGEKKENVVSVEAEADEETEVVKLKREDPERIICHLSNRRNVSVKAFRGTSLVSIREFYMKDGKLLPGCKGISLPSEQWAIFKESVPAIEEAILKMEGRMRSELNGKQHEDVSKSVDAAAPLEPVAPIEPVVPVSPLEPIAPIEVVRFDGKNFHFWAQQMKSLLKQLKIEHVLIEPCPNAALGEGAKAEDIAAAKAAERRWLNDDVVCCRNILSHLSDPLFNQYVNRKMSSKELWEELKMVYLYEEFGTKRSQVKKYIEFQIVDEKTVIGQVRDLNGIADSIAASGIFIDDNFHVSVIISKLPPSWKDFCIRLSREEYLPFWKLMECIQVEEEFRCGVQRGGEHSYSMGFHPGSRGGGQRSVDYKPLGIWRNRPEINARRSLSCNICGKRGHLSKNCWRRNDRQTNERRAEDDVSTSTTEVDTLASIPTDKLILDGSVGLCNAVDKSIK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1952g00006 515 Pfam gag-polypeptide of LTR copia-type 269 399 - -
Vium1952g00006 515 SUPERFAMILY ssDNA-binding transcriptional regulator domain 99 160 IPR009044 GO:0003677|GO:0006355
Vium1952g00006 515 Pfam Transcriptional Coactivator p15 (PC4) 100 150 IPR003173 GO:0003677|GO:0006355
Vium1952g00006 515 Pfam DEK C terminal domain 7 59 IPR014876 -
Vium1952g00006 515 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Vium1952g00006 515 Gene3D Transcriptional Coactivator Pc4; Chain A 90 166 IPR009044 GO:0003677|GO:0006355
Vium1952g00006 515 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 164 IPR045125 GO:0003713|GO:0060261
Vium1952g00006 515 ProSiteProfiles Zinc finger CCHC-type profile. 450 463 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1952g00006 Vium-Chr1952 62539 65917 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vium1952g00006 Retrotran_gag_2 1.4e-11 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1952g00006 - - var:108341934 940.258