Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1952g00003 ATGAAGGTTGACGCGGGGTCAGGGCGCGTGGCGTGGAACGAGGAGGAGAAGGCCGTTGTTGGGGCTGTTCTGGGTGGTCGAGCTCTGGAGTTCTTAACGACAAACTCGGTGTCGAATGAGAGTGTTTTAATGGCGGTTGGGAGCGACGAAGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGACTCAAATTTCAGTTGGAACTACGCGATTTTCTGGCAGCTCTCGCAGTCGAAATCCGGTGACTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGGGAGCCCAACGAGGAAGAGGAGGGTGCGGTGAGAGGAAAGCTGAGGCTTCTTCGCGTGGACGAGGAGATGGAGCAGAGGATGAGGAAGGGGGTGCTGCAGAAGCTGCACACTACTTTTGGAGGATCGGATGAGGACAATTACGCCTTTGGCCTCGACCACGTGACCGACACGGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCTCGCGGGCATGGTGGCCCAGGTAAGTGCTTCGTTTCCGGGAAGCATTTGTGGCTGAAATCTGTGCCCGATTATTGCGTGCGGTCTTCCTTGGTTAAATCTGCCGGAATTCAGACCATCGTTATGATCCCTACTGATTTGGGAGTGGTGGAGCTGGGTTCCGTGAGAGTGTTAGCGGAGAGTTTTGAACTCGTGCAGGCCGTTAAATCTGTGTTCTCCACGCAGTGTTCGCCGTACCCTGGGGTGAACGTGAGCGCCAGTGGGAATGCGGTTTATACAGGTTTGGCCATTGGGGATGGTAGTAAGGTAGATGGCGGAGTTCCAATTCCTAAGGTTTTTGCAAACGCAACTGGCAATCGGACCCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGAGGATAACAGGCCTTGGGCAGGCCATGCCCTCCCCAATGGGAATAACCTTAACAACAATCCGAATGCAATGAATGGTCTTCATGTTCCGGGTTGGGCAGTGAATTCAGGTGTCAGACAGGCTGGTCCTGTTGAGATTTTTGCTTCTAGGGGGGCATCCACGAGCAGTGTTGTAGCGGAGTTACCTAACGGTGCTAGACAGGATTTTAGGCTTGGCAACGGCTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCCACTTCTAGGCCCTCACATGTGAGACCTGTTGTTGGTGATTCAGAGCTTTCTGATGTTGAGGCCTCTTGCAAGGAGGAGCAAGCCAGTGTTTTGGATGAAAGGAAGCCCAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAACCCCTGAATCATGTGGAAGCCGAGAGACAGAGACGTGAAAAGCTCAACCAACGGTTCTATGCATTGAGATCTGTAGTCCCTAATATCTCCAAGATGGACAAAGCTTCGTTGTTGGGCGATGCCATTGCCTACATCAACGAGCTTCAGGCGAAGGTCAAAATCATGGAGGCTGAAAGAGAGAGATTTGGAAGCACCTCGAAAGATGGATCAGTTTTGGAAGCTAACTCAAGATCTGAAAATAAAAATCAAGAGAAAGAAGCTCCTGATGTGGATATTCAAGCAGCTCAAGATGAGGTAACTGTAAAGGTGAGTTGCCCTTTTGATACTCACCCTGTTTCCAAAGTAATTCAAACACTCAGAGAGGCACAAATCAGTGTTGTAGAATCAAAACTTGCTGCTGCAAATGATACTGTTTTCCACACATTTGTAATTAAGTCCCAAGGATCCGAACAACTTACAAAGGACAAGTTGATTGCTGTTTTTTCCCCACCAGAATCCAACCCATTGCAGCCATTGTCATCAGTTGAATAA 1839 0.4992 MKVDAGSGRVAWNEEEKAVVGAVLGGRALEFLTTNSVSNESVLMAVGSDEGLQNKLSDLVERPNDSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEGAVRGKLRLLRVDEEMEQRMRKGVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFVSGKHLWLKSVPDYCVRSSLVKSAGIQTIVMIPTDLGVVELGSVRVLAESFELVQAVKSVFSTQCSPYPGVNVSASGNAVYTGLAIGDGSKVDGGVPIPKVFANATGNRTHFREKLAVRKMEDNRPWAGHALPNGNNLNNNPNAMNGLHVPGWAVNSGVRQAGPVEIFASRGASTSSVVAELPNGARQDFRLGNGYQPQRQVQMQIDFTGATSRPSHVRPVVGDSELSDVEASCKEEQASVLDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSVLEANSRSENKNQEKEAPDVDIQAAQDEVTVKVSCPFDTHPVSKVIQTLREAQISVVESKLAAANDTVFHTFVIKSQGSEQLTKDKLIAVFSPPESNPLQPLSSVE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1952g00003 612 MobiDBLite consensus disorder prediction 386 446 - -
Vium1952g00003 612 FunFam Transcription factor bHLH13 428 502 - -
Vium1952g00003 612 Gene3D - 428 500 IPR036638 GO:0046983
Vium1952g00003 612 Pfam Helix-loop-helix DNA-binding domain 439 485 IPR011598 GO:0046983
Vium1952g00003 612 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 237 IPR025610 -
Vium1952g00003 612 MobiDBLite consensus disorder prediction 499 525 - -
Vium1952g00003 612 SMART finulus 441 490 IPR011598 GO:0046983
Vium1952g00003 612 Coils Coil 481 501 - -
Vium1952g00003 612 CDD bHLH_AtAIB_like 432 497 - -
Vium1952g00003 612 MobiDBLite consensus disorder prediction 405 446 - -
Vium1952g00003 612 PANTHER MYC 39 595 IPR045084 GO:0003700|GO:0006355
Vium1952g00003 612 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 435 484 IPR011598 GO:0046983
Vium1952g00003 612 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 438 498 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1952g00003 Vium-Chr1952 42199 44780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1952g00003 8 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.887 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1952g00003 bHLH-MYC_N 1e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1952g00003 - - gmx:100801502 947.962