Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1952g00002 ATGGACCATCAACCCCCACCCTGCCCCGATGACGACCTAACCGCCGCCGCCACCGCCACCCCGAGGTCCGGCACGCGCCACCCCGTCTACCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTCTCCGAAATTCGGGAGCCGCGCAAGAAGAACCGAATATGGTTGGGGTCTTTTCCGGTGCCAGAGATGGCGGCGCGAGCGTACGACGTCGCCGCGTACTGCCTCAAGGGTCGGAAGGCGCAGCTCAACTTTCCCGACGAGGTTGACTCCCTGCCGCTTCCTTCGTCCCGCACGGCCAGGGACATTCAGGCCGCCGCGGCCCAGGCGGCACGCATGATGAAAGCGGCTGGCAGTGACGTGAAAAGCAGCATTGCCGATGATGACGGAGACAGCGGCGGCGACGATTTTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGACGGCGAGTGCTACTGGGGTTGCCCCGGAGGATCCTCGTGGACTACCTCCGGCGACATCGCCGATTGGACGGAGGAGGAGCTTTCGCCGCAGCAACCGTCGTTCCTGGCGTGTCTATGA 561 0.6506 MDHQPPPCPDDDLTAAATATPRSGTRHPVYRGVRKRRWGKWVSEIREPRKKNRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVDSLPLPSSRTARDIQAAAAQAARMMKAAGSDVKSSIADDDGDSGGDDFWGEIELPELMDGECYWGCPGGSSWTTSGDIADWTEEELSPQQPSFLACL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1952g00002 186 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vium1952g00002 186 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Vium1952g00002 186 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vium1952g00002 186 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Vium1952g00002 186 MobiDBLite consensus disorder prediction 1 27 - -
Vium1952g00002 186 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Vium1952g00002 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 125 - -
Vium1952g00002 186 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vium1952g00002 186 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vium1952g00002 186 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Vium1952g00002 186 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1952g00002 Vium-Chr1952 14869 15616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1952g00002 1 186 AP2-EREBP Transcription Factor Family AT1G01250 54.455 6.97e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium1952g00002 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1952g00002 K09286 - gmx:100819971 311.997