Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1951g00002 ATGGGGCGTGTTAGGACGAAGACAGTGAAGAAGTCGTCAAGGCAAGTGATAGAGAGGTATTACTCTCGCATGACGCTGGACTTCCACACCAACAAGAAGGTTCTGGAAGAGGTCGCCATCATTCCCTCAAAGAGGCTCCGTAACAAAATCGCCGGCTTATCCACCCACCTTATGAAGCGCATCCAGAAGGGACCAGTGCGCGGAATCTCCCTCAAGCTGCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCTGAAGTCTCTGCCATCCGGACCGACCAGATCGAGGTCGACAAGGAGACCATCGACATGCTCGCCGCCCTCGGAATGTCCGATGTTCCCGGCGTCGTCAAGGTCGATCCGGTTGCCGTACAAGCACCGCCCGCATTCGGTCGCGGCGCAGGCGGACGGAGGTATTAG 423 0.5839 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGLSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETIDMLAALGMSDVPGVVKVDPVAVQAPPAFGRGAGGRRY 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1951g00002 140 FunFam 40S ribosomal protein S17 1 62 - -
Vium1951g00002 140 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vium1951g00002 140 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Vium1951g00002 140 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vium1951g00002 140 PANTHER 40S RIBOSOMAL PROTEIN S17 1 122 IPR001210 GO:0003735|GO:0005840|GO:0006412
Vium1951g00002 140 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1951g00002 Vium-Chr1951 38682 39412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1951g00002 1 140 Cytoplasmic Ribosomal Protein Gene Family AT2G04390 82.270 4.07e-81 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1951g00002 K02962 - gmx:100785402 222.246