LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1951g00001	ATGGGGCGAGTTAGGACGAAGACAGTGAAGAAGTCGTCAAGGCAAGTGATAGAGAGGTATTACTCTCGCATGACGCTGGACTTCCACACCAACAAGAAGGTTCTGGAAGAGGTCGCCATCATTCCCTCAAAGAGGCTCCGTAACAAAATCGCCGGCTTCTCCACCCACCTTATGAAGCGCATCCAGAAGGGACCAGTGCGCGGCATCTCCCTCAAGCTGCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCTGAAGTCTCTGCCATCCGGACCGACCAGATCGAGGTCGACAAGGAGACCATCGACATGCTCGCCGCCCTCGGAATGTCCGATGTCCCCGGCGTCGTAAAGGTCGACCCGGTTGCCGTTCAAGCACCGCCCGCATTCGGTCGCGGCGCCGGCGGAAGGAGGTATTAA	423	0.5887	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETIDMLAALGMSDVPGVVKVDPVAVQAPPAFGRGAGGRRY	140

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1951g00001	140	FunFam	40S ribosomal protein S17	1	62	-	-
	Vium1951g00001	140	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Vium1951g00001	140	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Vium1951g00001	140	PANTHER	40S RIBOSOMAL PROTEIN S17	1	122	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vium1951g00001	140	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vium1951g00001	140	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Vium1951g00001	140	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1951g00001	Vium-Chr1951	7862	8535	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1951g00001	1	140	Cytoplasmic Ribosomal Protein Gene Family	AT2G04390	82.979	5.30e-82	236

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1951g00001	K02962		-	gmx:100819067	224.557