Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1948g00001 ATGGCTCCAAAAACTCTCTTTGGCCTCCTCATCTTTCTCTTTCTGCTTGTTTCTTCCACTGCTTTTTCCTTCACATTCCATGGCTTCAATGAAAGCAATATCACCCGTGAAGAGAAAGCAAAGATTGACAACCAAGGTAGACTTGAGCTTACAAGAAGAGAAAACAATATTGTTGGCCATGCATTCTACAACGAATCCATCAAAATACTTCACAAAACTGCTTCAGTCCAGCCAAAGGTTTTCTCCTTCAGTACATGCTTTGTTTTCTCAATTGTGTCACCAAGCGCTGGTCCTGGTGGCTTTGGTCTTGCCTTCACAATAGCTCCTTCAACACGATTCCCACAAGCTGAAGGTGGCCATCTTCTTGGTCTTTTCAACTCCTCCAATGATATGAAATCCTCAAATCACATCTTAGTGGTTGAGTTTGATACAGTTAATGGCTACAAAGATGACACTGACACTGTAGGAAACCATGTTGGGGTGAACAAAAATGGTATGTCCTCAAATATATCCGAGCCTGCTGCTTACTTTGTAGATGGCAAAAAGGAAGAGTTCAACATGGAGAAGGCTGACGCTGTTTGTGTTTGGATTGAATATGATGGTGAAACAGAAATACTGAATCTCACAATATCCCCTTATTTGGAACCAAAACCAAGCAAACCTCTTATATCTGAGGCTGTTGACATCAAATCTGTCATGAAGGAGAGCATGTTTTTTGGTTTCTCTGCATCAACAGGTAAGAGGAAAGCAAGTGCTCATTATATTCTGGGGTGGAGTTTTGCATTAAATGGGATTGCCCCTCCATTAGATTATGCACTACTTCCAAAGCCACCACCAAAGGAGAAACACTCACAGTCTTTTCCTTGGATCAAGGTTATAATTGGCATGTTGTCTGCTTTGACATTTAACTTGTTGTGCCTTTTTCTTTATGTGACACTCTATAAGAGATACATGGTATTTGAAACTCTTGAGGACTGGGAAATGGATTGTCCTCACAGGTTCAGATACAGAGATCTTCACCTAGCAACAAAGAGGTTCGTAGAGAGCCAACTAATTGGAGTTGGAGGCTTTGGTTCTGTGTACAAAGGGGTGTTACCCAGAACAGGAACTGAGGTTGCTGTTAAAAGGATCCTGAGAACTCCAGCCAAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCACAAGAATTTGGTG 1212 0.4158 MAPKTLFGLLIFLFLLVSSTAFSFTFHGFNESNITREEKAKIDNQGRLELTRRENNIVGHAFYNESIKILHKTASVQPKVFSFSTCFVFSIVSPSAGPGGFGLAFTIAPSTRFPQAEGGHLLGLFNSSNDMKSSNHILVVEFDTVNGYKDDTDTVGNHVGVNKNGMSSNISEPAAYFVDGKKEEFNMEKADAVCVWIEYDGETEILNLTISPYLEPKPSKPLISEAVDIKSVMKESMFFGFSASTGKRKASAHYILGWSFALNGIAPPLDYALLPKPPPKEKHSQSFPWIKVIIGMLSALTFNLLCLFLYVTLYKRYMVFETLEDWEMDCPHRFRYRDLHLATKRFVESQLIGVGGFGSVYKGVLPRTGTEVAVKRILRTPAKGMREFAAEIESLGRLRHKNLV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1948g00001 404 ProSiteProfiles Protein kinase domain profile. 346 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1948g00001 404 Gene3D Phosphorylase Kinase; domain 1 331 404 - -
Vium1948g00001 404 PANTHER - 20 404 - -
Vium1948g00001 404 FunFam L-type lectin-domain containing receptor kinase V.9 21 265 - -
Vium1948g00001 404 CDD lectin_legume_LecRK_Arcelin_ConA 22 264 IPR001220 GO:0030246
Vium1948g00001 404 Pfam Protein kinase domain 347 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1948g00001 404 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 279 IPR013320 -
Vium1948g00001 404 SUPERFAMILY Protein kinase-like (PK-like) 327 404 IPR011009 -
Vium1948g00001 404 Pfam Legume lectin domain 23 270 IPR001220 GO:0030246
Vium1948g00001 404 Gene3D - 20 266 - -
Vium1948g00001 404 ProSitePatterns Protein kinases ATP-binding region signature. 352 383 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1948g00001 Vium-Chr1948 11036 12370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1948g00001 15 404 Receptor kinase-like Gene Family AT3G08870 47.500 5.73e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium1948g00001 Lectin_legB 2.4e-69 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1948g00001 - - vum:124828609 805.823