Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00042 ATGAAGTATGATTCTGATTTCCATCAACTAGCTATAGCGACAAGAACCATGCCCAAGAAAATTCGAGATTACCTCTTCAAAATCAAAAGCCCTCGTCCTCAAATCCGATTACCCTCTAAGAACTGGATTCTGTCTGGTTGCAAACATCCTAGGACACCTTCCTTTGCCTTGTACAGTGCTACAAACGAACTTTCTCGTCGTCGTCGTCATCATCATCAAGAACACGTTGTTCGTAATAACAACAACAATAACCACCGCAAGGACGATGCAGCCACCTTAGCAGATGTTGATCGTTTTCTCCTAGAGAATTTCAAGTCTTTGTACCTCAAAGACGACGATGAAACCTTAAACACCAAAAGGGTCTTCGAAGGTGACGACCAAAACCACGAAGCGGTAGAAACAACATCGCCGCGTGATGTTCGTGGGCCCACCCTGTTCTTTGTGAAGCCTGAGTTCTCTGGGTCACTGGTGGAGGACGCTCTCACAAACACCACCATTAATACAGCAACCAGTGACGAAGTAGGATCGGTGTCAACTGTCTCAACCCTCTACGACGTTTCGTCTTCCGGTTCTTACGAGAAGGAGAGTGCGGATAACGCGCTTCCGGATGATAGCATCGCTCTCTTGACGCACTCCACCAGCCCTTACGACGATTTCAGACGTTCCATGCAAGAAATGGTGAACAACCATGAAGGGGTGGTTGATTGGGATTTCATGGAGGAGCTCTTGTTTTCTTACCTTAATCTCAACCACAAAAAATCGCATAAGTTCATCCTCGGTGCTTTCGTCGATCTCATCACCGCCATCCGTCGGAGTAATTCTGAACCACCTTCCGACAAGCCACGTAGCGTTCGAACTGTTAGGAGTGTGACCAAAAACGTAACGTTAGGATTTGGGTCCTCTCTGTAA 909 0.4686 MKYDSDFHQLAIATRTMPKKIRDYLFKIKSPRPQIRLPSKNWILSGCKHPRTPSFALYSATNELSRRRRHHHQEHVVRNNNNNNHRKDDAATLADVDRFLLENFKSLYLKDDDETLNTKRVFEGDDQNHEAVETTSPRDVRGPTLFFVKPEFSGSLVEDALTNTTINTATSDEVGSVSTVSTLYDVSSSGSYEKESADNALPDDSIALLTHSTSPYDDFRRSMQEMVNNHEGVVDWDFMEELLFSYLNLNHKKSHKFILGAFVDLITAIRRSNSEPPSDKPRSVRTVRSVTKNVTLGFGSSL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00042 302 ProSiteProfiles OVATE domain profile. 208 268 IPR006458 -
Vium1947g00042 302 Pfam Transcriptional repressor, ovate 212 268 IPR006458 -
Vium1947g00042 302 NCBIfam uncharacterized plant-specific domain TIGR01568 206 269 IPR006458 -
Vium1947g00042 302 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 88 269 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00042 Vium-Chr1947 229228 230362 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium1947g00042 Ovate 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00042 - - vum:124828607 578.556