Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00033 ATGGATGGCATTGAGGATGATGCGAGCTATCACCCTAACCCATATCGCATCATCAGTCAACAACGAGGTTATGGTTATCAGAATTCTCCATATTCCCTCCCTGTTAATACTGAATATGCCCATCATCATGATGAAGATGAAGAACAAGAACAGTTAGAAGGAGATGATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCCCAAAAGGATGGGGATGAAGAAAATGGCATAGATGGGGTTGGTGATGAAAACGAGGATGAGGAAGAGGAGGTAGAGGATGATAAGCAGATTGGTTATTATGCCATTAAGAGTGAAGATGATTTGGAGTGGCCTCCAAAGAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTTCTCGTGTGACAGCGCCATCAGCTGCAACTCCAGTTCCTTCTGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACGTTTGTTCTGCTCGATGCATGGGGTGATACGTTTCTTCAACTTGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAGCAAGTATCGAAAATGGTAGCACAAGTTTCAAAAATTGAAAGGACGGATACTCAGTGTAGAAACCGCCTTGACACACTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCAAGAGAGTGATGGTGGAGATTGCAAATGGGTTTATTTTAAAAGAATGGATGAGCTAATGAGTTCACCCCCTCAACAAGTTGGTATCTCTTGTGGTTTGGACTCGGGAGATTATGTTTTTATGAACCGTGGAGTTTATTTGAATCAAGCTAATGGGTTGGATGAATTGAGGGATAGTCCTGAGAATGTGGAATCTACCGGTGAAGAAGGTTCAGATGGACTTCAACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGGCGAAGCTTCTTCCTTCAGGTTGCTTGCTGATTCCATACAAAAATTCAGTAGGATATATGAAAAGATAGAAAATAATAAAAGGCAGCAGATGATGGAACTGGAAAAAATGAGAATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATATTAGGGAATTTGCAGAGTGAGATATCAAAACTAGAGCAGAGAAATGATGAGAACGAAGATTCTGCTGAGAATGGTATGTGA 1164 0.4158 MDGIEDDASYHPNPYRIISQQRGYGYQNSPYSLPVNTEYAHHHDEDEEQEQLEGDDEVDQSNSLQLPQKDGDEENGIDGVGDENEDEEEEVEDDKQIGYYAIKSEDDLEWPPKKQKLKSLISTYELASRVTAPSAATPVPSAPKPSSGGRNSLTDWTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQESDGGDCKWVYFKRMDELMSSPPQQVGISCGLDSGDYVFMNRGVYLNQANGLDELRDSPENVESTGEEGSDGLQLQAKKRKGRSSGEASSFRLLADSIQKFSRIYEKIENNKRQQMMELEKMRMDFHKELETQKRQILGNLQSEISKLEQRNDENEDSAENGM 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00033 387 MobiDBLite consensus disorder prediction 76 94 - -
Vium1947g00033 387 MobiDBLite consensus disorder prediction 371 387 - -
Vium1947g00033 387 MobiDBLite consensus disorder prediction 130 151 - -
Vium1947g00033 387 MobiDBLite consensus disorder prediction 1 96 - -
Vium1947g00033 387 Coils Coil 329 360 - -
Vium1947g00033 387 Pfam Myb/SANT-like DNA-binding domain 155 242 IPR044822 -
Vium1947g00033 387 Coils Coil 362 382 - -
Vium1947g00033 387 MobiDBLite consensus disorder prediction 14 35 - -
Vium1947g00033 387 FunFam trihelix transcription factor ASIL2 156 218 - -
Vium1947g00033 387 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 139 378 IPR044823 -
Vium1947g00033 387 MobiDBLite consensus disorder prediction 275 313 - -
Vium1947g00033 387 Gene3D - 156 218 - -
Vium1947g00033 387 MobiDBLite consensus disorder prediction 361 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00033 Vium-Chr1947 198144 199931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1947g00033 303 385 Trihelix Transcription Factor Family AT3G14180 39.759 6.85e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium1947g00033 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00033 - - gmx:100779629 546.199