Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00029 ATGGGTGTTAACTCGAACAGAGTCGAACACTTCGACAACCGCGAAGCCGCCACCCTCAGAATCCAAACCCAGACACCGTCGTTTGAAATCCATGCAGTGCAATTGCCACCACAACGAACAACACTCCACAAACTCCGGCACAGAGTCTCCGAAATCTTCTTCCCCGACGACCCTCTCCACCGTTTCAAGAACCAAACATCCTTCAAAAAGTTCATCCTCGCACTTCAGTATCTCTTCCCCATTTTCCAATGGGCTCCAAACTACAACCTCACCCTTCTCCGCTCTGATCTCATCTCAGGACTCACCATTGCCAGCCTCGCCATTCCTCAGGGGATCAGTTATGCCAAGCTTGCAAACTTGCCCCCCATTATTGGATTATATTCAAGTTTTGTGCCTCCATTGATATACTCGCTGCTTGGAAGTTCTAAACATCTGGGTGTGGGACCTGTTTCGATCGCGTCTTTGGTTATGGGATCAATGTTAAGTGAGAAAGTTTCTTTTTCACAAGACCCTAGTCTGTATCTTGGACTGGCTTTCACCGCCACTTTCTTTGCTGGTGTGTTCCAAGCTTCTCTGGGTATTCTAAGGTTAGGGTTCGTAATTGATTTTCTGTCGAAGGCGACGCTGGTTGGATTCACCGGCGGTGCCGCCATTATCGTGTCACTGCAGCAGCTGAAAGGTTTGCTTGGAATCGTGCACTTTACAAGCAAGATGCAAATAGTTCCCGTCATGGTCTCTGTTTTCCAACAAAGACATGAGTGGTCATGGCAAACCATTCTTTTGGGATTCGGCTTCTTGACATTCCTGATGACCACAAGGCACATTAGCTTGAGGAAACCAAAACTCTTCTGGGTTTCAGCCGCTGCACCATTGGCATCAGTTATTCTGTCAACCATTTTAGTCTTTCTTCTGAGAAAAAAGACTCATCAGATTTCAATTATTGGACACTTACCAAAGGGACTTAATCCACCTTCATCAAACATGTTATACTTCAGTGGTCCTCACTTGGCTCTTGCTATCAAAACTGGCATTATCACTGGAATCTTATCTCTAACTGAAGGAATTGCAGTAGGTAGAACATTTGCATCACTTAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTAATGAACGTAGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGATCTTTTTCTAGATCCGCTGTTAAATACAATGCCGGAGCACAGACAACAGTTTCAAATATAATCATGGCTGCGGCTGTTCTAGTTACCCTTCTGTTTCTCATGCCTCTCTTCTACTATACACCAAATGTTGTCTTAGCGGCCATTATCATCACTGCTGTGATCGGGCTATTAGATTATCAATCTGCGTATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCATGTCTGTGCTCCTTTTTCGGGGTTCTGTTTATTTCAGTGCCTCTAGGCCTTGCTATAGCGGTTGTCATATCAGTCATCAAGATCCTGCTTCATGTCACTCGACCAAACACTTTGGTTTTGGGAAATATACCAGGAACTCAAATATTCCACAACATAAACCAATACAAAGAAGCTTCAAGAATTCCTTCATTCCTCATTTTGGGTGTTGAGTCCCCAATCTATTTCGCTAACTCAACTTATCTTCAAGAAAGGATACTGAGGTGGATTCGAGAAGAGGAAGAACATATAAAAGATAACGATGGAGCTGCATTGAAGTGCATGATTTTAGACATGACAGCTGTGACAGCCATAGACACAAGTGGGCTTGAGACTTTATGTGAACTTAAAAAGACGCTGGAGAAGAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGGCGGAGAAATTGCACAAGTCAAAAATTTTGGAATCCTTTGGATTAAAAGGAGTGTATCTCACAGTGGGAGAAGCTGTGGCTGAAATTTCATCGATCTGGAAAGCTCAACCTTGA 1968 0.4365 MGVNSNRVEHFDNREAATLRIQTQTPSFEIHAVQLPPQRTTLHKLRHRVSEIFFPDDPLHRFKNQTSFKKFILALQYLFPIFQWAPNYNLTLLRSDLISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSKHLGVGPVSIASLVMGSMLSEKVSFSQDPSLYLGLAFTATFFAGVFQASLGILRLGFVIDFLSKATLVGFTGGAAIIVSLQQLKGLLGIVHFTSKMQIVPVMVSVFQQRHEWSWQTILLGFGFLTFLMTTRHISLRKPKLFWVSAAAPLASVILSTILVFLLRKKTHQISIIGHLPKGLNPPSSNMLYFSGPHLALAIKTGIITGILSLTEGIAVGRTFASLKNYQVDGNKEMMAIGLMNVAGSCSSCYVTTGSFSRSAVKYNAGAQTTVSNIIMAAAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLLDYQSAYKLWKVDKLDFLACLCSFFGVLFISVPLGLAIAVVISVIKILLHVTRPNTLVLGNIPGTQIFHNINQYKEASRIPSFLILGVESPIYFANSTYLQERILRWIREEEEHIKDNDGAALKCMILDMTAVTAIDTSGLETLCELKKTLEKRSLQLVLANPVGNVAEKLHKSKILESFGLKGVYLTVGEAVAEISSIWKAQP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00029 655 Pfam STAS domain 525 643 IPR002645 -
Vium1947g00029 655 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Vium1947g00029 655 Pfam Sulfate permease family 93 472 IPR011547 GO:0016020
Vium1947g00029 655 NCBIfam sulfate permease 80 643 IPR001902 GO:0016020|GO:0055085
Vium1947g00029 655 CDD STAS_SulP_like_sulfate_transporter 525 640 - -
Vium1947g00029 655 PANTHER SULFATE TRANSPORTER 42 647 IPR001902 GO:0016020|GO:0055085
Vium1947g00029 655 SUPERFAMILY SpoIIaa-like 529 647 IPR036513 -
Vium1947g00029 655 FunFam Sulfate transporter 31 504 650 - -
Vium1947g00029 655 Gene3D STAS domain 504 649 IPR036513 -
Vium1947g00029 655 ProSiteProfiles STAS domain profile. 524 647 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00029 Vium-Chr1947 185816 191110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1947g00029 1 655 Inorganic Solute Cotransporters AT3G15990 76.865 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00029 K17471 - gmx:100812617 1147.88