Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00008 ATGGATGTTACTTCTCTGGGTTCAAGTACCAATACCCAAACTGACCAACACCCTTTGCTGATGGAGCAACTGGAAAATCATAATGGTCGTCAGCACGTAATTGACATTACTATGAATGGTGAAGCTCTAACTATGTCTTCCCATATTGATCAACACTCTGAAATGCATTTACCGCAGAGTGGAGATCAACCAGCTGCGGACACACAAGATTCCACTCATCAAGCATCTTCATCTTCGGCATCCAGATTAAACTCTAGAAATTCAGCTTCGCTAAGAAGAGGTGAAGGATATGGTCATCGTGGTCGGAGTCCATTGAATTCTGGATTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATAGTCGTTTTGTCGCTGTCCAGGAATGAAAATCCCCAAGCTCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGGAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACCTATACTGCTATCTATGTTTCTCATGTCTCAGACGAGGAGAATGGTAATGCTACACAATCAGCCACAAGAAACCCTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTTGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTTGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAGTTATATAGATTATGTATTGTTTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTCTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGAATTTTCTCATAATAGAGGAGCAACAGTGGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAACGTTGATGATCAGGATGTCAATGCAGCTTTGGATGAGGGTGGAATTTTGGCTGCAGGAACAGAAAAAGAGCGAGTTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACAGAAGTTGGTACAACTAATGGAGAGTCACCTTCAGCCTGGGACTCCAGTACTCATTAG 1278 0.4108 MDVTSLGSSTNTQTDQHPLLMEQLENHNGRQHVIDITMNGEALTMSSHIDQHSEMHLPQSGDQPAADTQDSTHQASSSSASRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDSSQPSQGSSGSNPPDRTYTAIYVSHVSDEENGNATQSATRNPIIPGAFTSRLNGFVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREEFSHNRGATVESINALPIFKFKLKNNENVDDQDVNAALDEGGILAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTTNGESPSAWDSSTH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00008 425 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Vium1947g00008 425 SMART ringv_2 364 406 IPR011016 GO:0008270
Vium1947g00008 425 SMART ring_2 365 405 IPR001841 -
Vium1947g00008 425 MobiDBLite consensus disorder prediction 54 99 - -
Vium1947g00008 425 SUPERFAMILY RING/U-box 357 412 - -
Vium1947g00008 425 FunFam E3 ubiquitin-protein ligase 348 415 - -
Vium1947g00008 425 Pfam Ring finger domain 365 406 IPR001841 -
Vium1947g00008 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
Vium1947g00008 425 MobiDBLite consensus disorder prediction 54 91 - -
Vium1947g00008 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00008 Vium-Chr1947 68834 73085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1947g00008 1 416 C3H Transcription Factor Family AT1G80400 57.346 5.79e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00008 - - gmx:100819729 748.814