Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00007 ATGGAGAAAGAAGATCTTGGCCTTGAAATCACCGAGCTCCGGTTGGGCCTTCCCGGCGCCGCTGCGGAGAACAACACCGACAAGGACAAGAATAAGAACAAGAAGAGGGTCTTCTCCGACATTGAAGGTGAAAACAGCTCCTCTGAAGAAGATGGCAAAAAAGAAACCAAGAATCAAGTGGTCGGGTGGCCTCCGGTTTGCTCCTACCGCAAGAAGAACACCGTCAATGAACCTAAACTCTACGTTAAAGTCAGCATGGACGGCGCTCCTTTCTTGCGTAAAATCGATTTAGCCATGCACAAGGGATACTCCGACTTGGCCTTCGCCTTGGACAAGTTCTTCGGTTGCTACGGAATCGGCGAAGCGTTGAAGGATGCGGAAAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGCGACTGGATGCTGGTTGGAGATGTTCCTTGGGAGATGTTTAGGGAGTCATGCAAGAGATTGAGGATTATGAAGAGATCAGATGCAAAGGGGTTCGATCTGCAGCCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGAGAAAATGA 567 0.4885 MEKEDLGLEITELRLGLPGAAAENNTDKDKNKNKKRVFSDIEGENSSSEEDGKKETKNQVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGIGEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVRK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00007 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Vium1947g00007 188 SUPERFAMILY CAD & PB1 domains 73 164 - -
Vium1947g00007 188 MobiDBLite consensus disorder prediction 25 57 - -
Vium1947g00007 188 FunFam Auxin-responsive protein 74 175 - -
Vium1947g00007 188 MobiDBLite consensus disorder prediction 19 57 - -
Vium1947g00007 188 Gene3D - 73 176 - -
Vium1947g00007 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 168 IPR003311 GO:0005634|GO:0006355
Vium1947g00007 188 Pfam AUX/IAA family 37 171 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00007 Vium-Chr1947 51600 54306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1947g00007 39 186 B3 DNA Binding Superfamily AT4G23980 30.405 2.27e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1947g00007 AUX_IAA 9.2e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00007 K14484 - gmx:100811879 305.834