Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00006 ATGTGGTCACAATCACAAAGCAGCATCCACTCGTCGGAATCGGACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACGCTGGGACTTCCCGGTACCAAACGTTCCTTCTCCGACACCGTTGATCTTCATCTTGCCACTTCGCTAAATAAATCCAAACTCCCAACACCAAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCCATGAAGAGTTGCAAGTTCGTGAAGGTGGCTGTGGACGGAGCTCCTTATCTACGAAAAGTGGATCTTGAATTGTACGACAGTTACGAACATTTGATGACAGAATTAGAGACCATGTTTTGTGGCTTAGACATTCGCAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTACGAGGACAAAGATGGTGATTGGATGTTGGTCGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGGCTTATGATTAGCTCAGAGGCTATTGGCCTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCCACCTAG 570 0.4737 MWSQSQSSIHSSESDAVDCNLKETELTLGLPGTKRSFSDTVDLHLATSLNKSKLPTPKEQVVGWPPVRASRKNAMKSCKFVKVAVDGAPYLRKVDLELYDSYEHLMTELETMFCGLDIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAIGLGPRSSSKCSGST 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00006 189 Gene3D - 72 183 - -
Vium1947g00006 189 Pfam AUX/IAA family 76 180 IPR033389 -
Vium1947g00006 189 SUPERFAMILY CAD & PB1 domains 70 170 - -
Vium1947g00006 189 FunFam Auxin-responsive protein 73 181 - -
Vium1947g00006 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 176 IPR003311 GO:0005634|GO:0006355
Vium1947g00006 189 ProSiteProfiles PB1 domain profile. 78 173 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00006 Vium-Chr1947 36420 37921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1947g00006 48 181 B3 DNA Binding Superfamily AT1G59750 28.986 1.35e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium1947g00006 AUX_IAA 4.3e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00006 K14484 - gmx:100500488 304.679