Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1947g00002 ATGAGTGGGAGGAGTTGGTTGAGTGGCATGCATGAGCACCTTAAATTGGCGAGAGAATACGCGGCGGAAGGACTCTACGACACCTCTATCATCTTCTTCGACGGCGCCGTTGCCCGAATCGGCGACCACCTCAACTCCGTCGACGACCCTTTAGTGAGAGCGAAATGGATGAACGTGAAGAAAGCGCTGTGCGATGAAACCCAAGTGGTGAAACAACTAGACGCGGAGAGAAGGGCGTTTAAGGAAACTCGATCACGATCACGATCACGATCACACTCCTCCTCCTCCTTTGTTTTTCAACCGTCGGATGAGTATCACATTCCCACTACCACTCCTCGCGCTTCCACCGTCGACGAACATGACCCCGACGTCTGGAGACCGCCAAGTCGAGATGCCAGAAGGCCCGCCATGCCCACTGCTCGAAAGGACGGAGCTTGGAGCCGAGGCTCTACCAGGCCCGCTGCTGGTGCCGTAAAGCCCAGCAGGGTTGGCTCTGGGCCCCGACCACCGACGGATGGAAAGAACGGCGGCGGCGGTGCTTCTGGAAAGGGTAGCAGGACAGGTGATGGTTCACGTTCAGTTAATGAAGATGGGAAGAAGTCAAAAAAGTATGAGTATGAAGGTCCTGATCCTGAGCTGGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGGTCTCCTGGTGTGAGATGGGACGATGTTGCAGGCCTCACTCAAGCAAAAAGCCTTCTAGAAGAAGCCCTTGTACTTCCCTTGTGGATTCCTGAATATTTCCAGGGAATAAGGAGACCTTGGAAAGGTGTACTCATGTTTGGCCCTCCAGGAACTGGGAAAACTCTTCTTGCTAAAGCAGTTGCCACTGAATGTGGTACCACTTTCTTTAACGTTTCTTCAGCTACTTTGGCATCTAAATGGCGTGGAGAGAGCGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCACATGCACCCAGTACCATTTTCATTGATGAAATCGATTCTCTATGCAATGCTAGGGGGTCTTCCGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCCAAAAATGAAGATGGAACCCGTAAGATAGTAATGGTTTTGGCATCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTGGAGAGTCGTAAAGAGCTGATCCGTATCAATCTGAGGACTGTAGAGGTGGCCACTGATGTGAACATAGAGGAAGTGGCCAAAAGGACAGAAGGGTACAGTGGAGATGACTTGACAAATGTGTGCCGTGATGCTTCCCTGAATGGTATGAGGCGTAAGATAGCAGGAAAAACGCGTGATGAGATCAAGAAGATGTCCAAGGATGAGATTTCCAAGGACCCTGTTGCAATGTGTGATTTTACAGAAGCTTTGAAGAAAGTTCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCATCAAAAGTGGTTTTCTGAATTTGGATCAGCCTGA 1548 0.4935 MSGRSWLSGMHEHLKLAREYAAEGLYDTSIIFFDGAVARIGDHLNSVDDPLVRAKWMNVKKALCDETQVVKQLDAERRAFKETRSRSRSRSHSSSSFVFQPSDEYHIPTTTPRASTVDEHDPDVWRPPSRDARRPAMPTARKDGAWSRGSTRPAAGAVKPSRVGSGPRPPTDGKNGGGGASGKGSRTGDGSRSVNEDGKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLTQAKSLLEEALVLPLWIPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGSSGEHESSRRVKSELLVQVDGVNNSSKNEDGTRKIVMVLASTNFPWDIDEALRRRLEKRIYIPLPNLESRKELIRINLRTVEVATDVNIEEVAKRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKKMSKDEISKDPVAMCDFTEALKKVQPSVSQADIERHQKWFSEFGSA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1947g00002 515 SMART AAA_5 263 406 IPR003593 GO:0016887
Vium1947g00002 515 MobiDBLite consensus disorder prediction 79 212 - -
Vium1947g00002 515 FunFam Katanin p60 ATPase-containing subunit A1 5 81 - -
Vium1947g00002 515 MobiDBLite consensus disorder prediction 190 212 - -
Vium1947g00002 515 CDD Kp60-NTD 8 76 - -
Vium1947g00002 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 511 IPR027417 -
Vium1947g00002 515 FunFam Katanin p60 ATPase-containing subunit A1 405 491 - -
Vium1947g00002 515 Pfam ATPase family associated with various cellular activities (AAA) 267 404 IPR003959 GO:0005524|GO:0016887
Vium1947g00002 515 Pfam AAA+ lid domain 426 468 IPR041569 -
Vium1947g00002 515 Gene3D - 6 81 - -
Vium1947g00002 515 Gene3D - 225 505 IPR027417 -
Vium1947g00002 515 PANTHER AAA DOMAIN-CONTAINING 87 514 - -
Vium1947g00002 515 Gene3D - 405 491 - -
Vium1947g00002 515 MobiDBLite consensus disorder prediction 116 138 - -
Vium1947g00002 515 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 8 515 IPR028596 GO:0008017|GO:0008568|GO:0051013
Vium1947g00002 515 MobiDBLite consensus disorder prediction 90 115 - -
Vium1947g00002 515 FunFam Katanin p60 ATPase-containing subunit A1 225 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1947g00002 Vium-Chr1947 18586 21377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1947g00002 219 460 Calmodulin-binding Proteins AT3G56690 42.276 1.29e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1947g00002 K07767 - csav:115705274 764.607