Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1946g00001 ATGGAGTTCGGAGGGAACATCTTCTGCCTCTCCAACAGAGACCAAAATGGGAATACTAACGCCAACGCTTTCGCCTGGGATTCATGGCAAACAACCACTTCTAATAATAACAACACCCCTTCCAGGTTCCTCAACGCTTTCAACGCCCCCGTCACTGCCCTCACCGCTCCGGAGGGCTCCGCCGCCAACCGCTCCGAGGCCGCCGGGCTCGCCAGCGCTCTCATGTTCCTCCCTCAAAACGGCGGCGTTTTGCGACACCGCCAGCAGCAGCAGCAGCAGCAACATCCGTACGGAGGTGATGGGTCCCACGTGCACCCCGACCCCCACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAACTGGAACCGTCTCCTCTGCTGCTGCTGCTGCTACTTTCGGCGGGGGGTTGGTGTTGGGGGATAAGCGTGGGAAAGGAGGGTATTCCGGTGGCGGGGCGGCGGTGAAAGCTGTCGGGTTGACTACGGCGACGGTGCCTAGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGGTGAACGCCAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGCAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCACGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTGTCAACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAACCGAGCAGCCATAATGGCGAGACAATTTGTATCAGACAGAGATTGGCATATTCAGCATCATGCAGTGGAAGACATGAAGGAGATCCAACCGGAGTCCAATTACTTCCCACAACAGATGTTTCCACAGACACAGTGA 1020 0.5451 MEFGGNIFCLSNRDQNGNTNANAFAWDSWQTTTSNNNNTPSRFLNAFNAPVTALTAPEGSAANRSEAAGLASALMFLPQNGGVLRHRQQQQQQQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGTGTVSSAAAAATFGGGLVLGDKRGKGGYSGGGAAVKAVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHHAVEDMKEIQPESNYFPQQMFPQTQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1946g00001 339 MobiDBLite consensus disorder prediction 238 259 - -
Vium1946g00001 339 Pfam SBP domain 174 247 IPR004333 GO:0003677
Vium1946g00001 339 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 151 283 IPR044817 GO:0003677
Vium1946g00001 339 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Vium1946g00001 339 MobiDBLite consensus disorder prediction 84 104 - -
Vium1946g00001 339 FunFam Squamosa promoter-binding-like protein 14 166 235 - -
Vium1946g00001 339 Gene3D - 166 235 IPR036893 GO:0003677|GO:0005634
Vium1946g00001 339 MobiDBLite consensus disorder prediction 84 98 - -
Vium1946g00001 339 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1946g00001 Vium-Chr1946 25465 30754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1946g00001 111 247 SBP-box Gene Family AT1G27370 51.825 1.77e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium1946g00001 SBP 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1946g00001 - - var:108327478 587.03