Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00027 ATGGCTAAAGGTGGAAAACTAATGAGGCTGAAATCGGTGCTGAAGAAATGGAACTCATTCGGCAACGGCAAGCAGAGCCGCCACAGCACCAGCGCCGTCGCCGCCGACGAGTCCTCCTCCAGATCGGACCTCCACGCCGTCTACGTCGGAAAATCCCGCCGCCTCTACCGGGTCTCCTCCGGCGTCCTCGACAACCCCGTCTTCCGGGAACTGGTAGAGAGGTCCCGCGACGACTCCGACCACCAAGACGACACCATCAATGTGGCATGCGAGGTTGTCCTCTTCGAACACTTGCTGTGGATGCTCGAAAACGCCGACCCACAACCCGAGTCTCTCAACGAAATCGTCGACTTCTATGCCTGCTAA 366 0.5847 MAKGGKLMRLKSVLKKWNSFGNGKQSRHSTSAVAADESSSRSDLHAVYVGKSRRLYRVSSGVLDNPVFRELVERSRDDSDHQDDTINVACEVVLFEHLLWMLENADPQPESLNEIVDFYAC 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00027 121 MobiDBLite consensus disorder prediction 19 39 - -
Vium1943g00027 121 MobiDBLite consensus disorder prediction 19 38 - -
Vium1943g00027 121 Pfam Auxin responsive protein 10 102 IPR003676 GO:0009733
Vium1943g00027 121 PANTHER EXPRESSED PROTEIN 25 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00027 Vium-Chr1943 211989 212963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00027 3 102 Calmodulin-binding Proteins AT4G34750 26.471 6.37e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00027 - - ccaj:109809545 206.068