Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00026 ATGGGTCACGTTGAAAGTGGTGCTTCATTTTTTGCTGCAGTTACACTCGCACTCCACCTCGTAACAGCAACCATCCTTTTCCTTCCCCCATCTTCTTTAAACAGCGCTGTTAGAATCGTTAGGGTTCGTAGGGACGGCACGGGGGATTTCAGGACGGTGACGGAGGCCGTCAACAGCATTCCTTCAGGGAACAAGCGGCGAGTGGTGGTGTGGATCGGAATTGGCGAGTACCGCGAGAAGATAACAGTCGATAGGTCCAAACCTTTCGTCACGTTTTATGGAGAGAGAAATGACAGCGACACCCACACCATGCCCATCATAACGTACCACGCCACCGCGTTAAGGTATGGGACAGTCGACAGCGCCACCGTCGCTGTCGACTCCGACTACTTCGTCGCTGTCAATGTCGCTTTTGTGAACTCGTCTCCAAGGCCAGATGAAAAGAGTGTTGGAGCACAGGCAGTAGCCATGAGGATATCAGGGGACAAGGCTGCGTTCTACAACTGCAAGTTCACGAGCTTTCAGGACACTTTATGTGATGATAAAGGCAGACATTTTTTCAAGGACTGCTACATCCAAGGCTCCTACGATTTCATCTTTGGAAATGGAAAATCCATCTACTTGAGAAGTACCATAGAATCGGTTGCAAAGGGTTTGAGTGTTATAACAGCACAAGGGAGGGAAAGCGCTGCAGAAGATACTGGATTCAGTTTCCTTCACTGCAACATTACGGGTAGTGGTAACAGGAACACTTACCTCGGACGTGCCTGGAAGAAGAGCCCCAGAGTGGTATTTGCTTACACTTACATGGGCTCCCTCATCAGTGCCCGGGGATGGTTCACCAATCAACTTCCTCAACGCAAGTCCAACCAGACAATCTACTATGGAGAATATAGGTGCATGGGAGCAGGAGCTTTTTCCTCTGGGCGTGTAAAATTTCGGAAGATACTGTCGTATGAAGAAGCAAAGCCCTTCATGAGCATGGCCTATATTCATGGAGGAAAGTGGGTTGTCCCACCTCCAAAGCTGTGA 1032 0.4942 MGHVESGASFFAAVTLALHLVTATILFLPPSSLNSAVRIVRVRRDGTGDFRTVTEAVNSIPSGNKRRVVVWIGIGEYREKITVDRSKPFVTFYGERNDSDTHTMPIITYHATALRYGTVDSATVAVDSDYFVAVNVAFVNSSPRPDEKSVGAQAVAMRISGDKAAFYNCKFTSFQDTLCDDKGRHFFKDCYIQGSYDFIFGNGKSIYLRSTIESVAKGLSVITAQGRESAAEDTGFSFLHCNITGSGNRNTYLGRAWKKSPRVVFAYTYMGSLISARGWFTNQLPQRKSNQTIYYGEYRCMGAGAFSSGRVKFRKILSYEEAKPFMSMAYIHGGKWVVPPPKL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00026 343 SUPERFAMILY Pectin lyase-like 39 337 IPR011050 -
Vium1943g00026 343 FunFam Pectinesterase 35 339 - -
Vium1943g00026 343 Pfam Pectinesterase 41 333 IPR000070 GO:0030599|GO:0042545
Vium1943g00026 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 30 337 - -
Vium1943g00026 343 Gene3D - 38 340 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00026 Vium-Chr1943 191593 193216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00026 35 343 Carbohydrate Esterase AT5G07410 50.809 4.52e-119 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00026 K01051 - gmx:100790786 573.933