Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00025 ATGGATGATGGTGGAGGTTCCAAACTGAGTGGGATTAGGCAGATTGTGAGATTGAAGGAAATGTTTCAGAAGTGGCAAACTGTGACTCTGGGCTCAAAAGATTCAAACCATGATTCTGATGTTGCTCGTCCTGGAGGCATTCCACCATTGATAAACAAAAGACTAACAAATCTTTTGTACTGTGACTCTGATGAGGATAGCTGCTACAGTCCTCAACCACCGCATGATGTTCCCAAAGGTTACTTAGCTGTCTATGTTGGGCCTGAGCTTCGGAGGTTTATCATCCCAACAAGCTACCTTAGCCACTCTTTGTTCAAGGTTTTGTTGGAAAAAGCTGCAGAGGAGTTTGGGTTTGATCAGAGTGGTGGACTCACCATTCCGTGTGAAATTGAAACCTTCAAATACCTCTTGAACTGCATGGAGAACCACGATGACAGCTCCGTCGCTGGAAACACAGCAACAGTGGAAGAATAA 474 0.4473 MDDGGGSKLSGIRQIVRLKEMFQKWQTVTLGSKDSNHDSDVARPGGIPPLINKRLTNLLYCDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLNCMENHDDSSVAGNTATVEE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00025 157 Pfam Auxin responsive protein 68 139 IPR003676 GO:0009733
Vium1943g00025 157 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 60 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00025 Vium-Chr1943 186553 187952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00025 1 156 Calmodulin-binding Proteins AT3G43120 65.625 4.33e-72 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00025 K14488 - gmx:100795275 281.567