Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00024 ATGGATGATGGTGGAGGTTCCAAACTGAGTGGGATTAGGCAGATTGTGAGATTGAAGGAAATGTTTCAGAAGTGGCAAACTGTGACTCTGGGCTCAAAAGATTCAAACCATGATTCTGATGTTGCTCGTCCTGGAGGCATTCCACCATTGATAAACAAAAGACTAACAAATCTTTTGTACTGTGACTCTGATGAGGATAGCTGCTACAGTCCTCAACCACCGCATGATGTTCCCAAAGGTTACTTAGCTGTCTATGTTGGGCCTGAGCTTCGGAGGTTTATCATCCCAACAAGCTACCTTAGCCACTCTTTGTTCAAGGTTTTGTTGGAAAAAGCTGCAGAGGAGTTTGGGTTTGATCAGAGTGGTGGACTCACCATTCCGTGTGAAATTGAAACCTTCAAATACCTCTTGAACTGCATGGAGAACCACGATGACAGCTCCGTCGACTCTTGGTGGAATTGCAGCTGGAAACACAGCAACAGTGGAAGAATAAATACTTGCTCTCATCTACATAGAAGGAAAACCATGGTTCTGGTTTCTACACTTTCTTCCATTTTGGTTTTGATTTCTTGCATGAAGAATGACATAACTCCCCAACAAAAAAGATTTGTGATGGGTCATTTGTTTGTAGAACAGCTGTTAAAAATCTGTGTACTTTTCATCCAGTGTTCACCCAATACATGTACTTTCCCAACATATTAA 702 0.4188 MDDGGGSKLSGIRQIVRLKEMFQKWQTVTLGSKDSNHDSDVARPGGIPPLINKRLTNLLYCDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLNCMENHDDSSVDSWWNCSWKHSNSGRINTCSHLHRRKTMVLVSTLSSILVLISCMKNDITPQQKRFVMGHLFVEQLLKICVLFIQCSPNTCTFPTY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00024 233 Pfam Auxin responsive protein 68 139 IPR003676 GO:0009733
Vium1943g00024 233 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 62 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00024 Vium-Chr1943 186552 188397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00024 1 149 Calmodulin-binding Proteins AT3G43120 67.320 1.34e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00024 K14488 - gmx:100795275 272.322