Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00017 ATGCAAACGCAACCAATTTCCACTGTCGCCTTCACGCTCTTCCTCCTCTTGTTGTCTCCACCACGCGCCGCCGCGGCAAGGCCACCACCAGATCCACTTCGTACATCATGCGCGCAGGCCAGGTACCCCGCTCTATGCGTGCAAACCCTCTCCAACCTTTCCAACACCGCCGCCAAGCCCCTCGACCTTGCCCAGGCCGCCGTCAGAGCTAGTCTTGCCCGTACGCGCGGTCTCTCCGCCTACCTTTGGGCGCTAAAGGCTGCATCGCAGGGTTTCGAACTGAGGCAGCGAGTTGCGGTGAGTGACTGCGTGCAGCAGATATCCGATTCGGTGAGAGAATTGAGCAAGACGCTGTACGAGTTGCAGCACCTCCGCGACAACACCTTCCAGTGGCAGATGAGCAACGTCCAGACCTGGACCAGCGCCGCCCTCACCAACGGCGACACTTGCATCTCCGGCTTTAACGCTGTCGCCGCCGCCGCCTGGAATATGAAGTTAGAGCTCAAGCAAAGAGTCACGGACGTTTCCATGTTCACCAGCAACGCGCTTTACCTCATCAGCCGTCTCGCTGACAGCGTCACGGGGAAGCCTCGCGCCAATTCCGGGAACTGA 612 0.5997 MQTQPISTVAFTLFLLLLSPPRAAAARPPPDPLRTSCAQARYPALCVQTLSNLSNTAAKPLDLAQAAVRASLARTRGLSAYLWALKAASQGFELRQRVAVSDCVQQISDSVRELSKTLYELQHLRDNTFQWQMSNVQTWTSAALTNGDTCISGFNAVAAAAWNMKLELKQRVTDVSMFTSNALYLISRLADSVTGKPRANSGN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00017 203 SMART PMEI_2 28 185 IPR006501 GO:0004857
Vium1943g00017 203 NCBIfam pectinesterase inhibitor domain 7 189 IPR006501 GO:0004857
Vium1943g00017 203 CDD PMEI-like_3 35 190 - -
Vium1943g00017 203 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 191 IPR035513 -
Vium1943g00017 203 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 189 IPR035513 -
Vium1943g00017 203 Pfam Plant invertase/pectin methylesterase inhibitor 33 184 IPR006501 GO:0004857
Vium1943g00017 203 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00017 Vium-Chr1943 136077 137067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00017 33 192 Carbohydrate Esterase AT3G14310 29.697 5.09e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00017 - - gmx:100810705 246.514