Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00013 ATGAAGGTTCCATCCAATGGTTTCTTGCCTAATTCTGGCGAAGCAGGGGAAAGGAAGCCGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTCTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTGTACTTCCCCCAAGGACACAGCGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGGCAGCCTACTGAGTTCTTCTGCAAAACACTTACAGCTAGTGACACCAGCACTCATGGTGGATTCTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTTTGGATTATTCAATGCAGCCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCATGATAATACATGGCCATTTAGACATATTTATAGAGGACAACCAAAGAGGCATCTATTAACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGCTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAACCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTACAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAATCTGGAGTACGCAGATATATGGGGACAATAACTGGGATCAGCGACTTGGATCCTGTACGATGGAAGAACTCACAATGGCGAAACATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCCAGTAGAGTTTCAATTTGGGAAATTGAACCAGTAGTTACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGAAGAATCGGATATGGAAAATGCTTTCAAGAGAGGTATGCCCTGGCTTGGAGAGGAGTTTGGCATGAAGGATGCCTCTAGTTCAATCTTTCCTGGTTTTAGTTTAGTTCAGTGGATGAGCATGCAACCGAATAATCAGCTCTCAGCGGCTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACTCTTCAGGGTAACCTTGGCACCGAAGACCCATCCAAGTTATTGAGCTTTCAACCTCCTGTTCTCTCTTCCCCAACTCTTCAATTAAACAAAACCAATCTGCCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAGCAACAGCAGCAGCTACAGCAACAACAACAGCTGCAGCAGCAGCAACTACAGTCATTGTTGCAAATACCAATGAACCATCTCCAGCAACAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGCCATTGCTGCAGCAAATGCCTCAACAGCTAGGACAGCAGCCCCAGAAACCGCAACAGCCAAGTCAGCATGCTACTCTTACGAATAATGGGGTAGTTTCTTCTAACCAGATTACAGGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAGCAACAATTACTCTCAGGAGGTATCCAAACCCAGCAAGGTATCCAATCAGCTAGTAAGAATACGTTCCCATTGACATCCTTACCACATGACTCGCAATTTCAGCAACAGTTAGACCAGCAAGCTAACCTACTGAGGCAACAACAGCAACAACAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGATTGCATCACAACAACAACCGCCTGCTACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAGTTGCTACAGAAATTGCAGCACCAACAACAGCAACTTCTTTCTACGTCCACCCCACTATTGCAGTCTCAGCTTCTACCGCAACAAAATCCTCACCAACAAAACCAGCAATTACCACTGCCCCCACCACCTATATCACATCATCAGCCTCAACAGCTTGCCAATAATGTATGTTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAACAGAATCCTATGAGCCAATCCCAGAATACACAGAAATCACTTACCACCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCGGCCCCATTAGGGGGGAGTTTGATGGTTGAGCCCACTAGTAATCTGTTACAGGATCTTCACAGTAAGCCTGACATGCAGAACAAACATGAGTTGCTCAATCTAAAAGGATCTGACCAGTTGAAGTATAAAGGGGCAATCACCGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACCATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGACTGCCAAACATGCCTTTCAAGCCCGGTTGCTCAAGTGATGTTGTCATCAACGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGGCAACCAACCTCCACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCTCATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCTAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTACAGCAGAATAGCCAGCTAG 3402 0.4503 MKVPSNGFLPNSGEAGERKPINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDEESDMENAFKRGMPWLGEEFGMKDASSSIFPGFSLVQWMSMQPNNQLSAAQSGCFPSMLPSNTLQGNLGTEDPSKLLSFQPPVLSSPTLQLNKTNLPNQINQLQQSPVSWPQQQQLQQQQQQLQQQQQLQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQMPQQLGQQPQKPQQPSQHATLTNNGVVSSNQITGQFVQPPMAYGQLQQQQLLSGGIQTQQGIQSASKNTFPLTSLPHDSQFQQQLDQQANLLRQQQQQQQQTQLQQSPLQLLQQNLPQIASQQQPPATQMLQQNPSEQQLHLQLLQKLQHQQQQLLSTSTPLLQSQLLPQQNPHQQNQQLPLPPPPISHHQPQQLANNVCSTEKLLNSNNFSSSSLMQSQQNPMSQSQNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPAPLGGSLMVEPTSNLLQDLHSKPDMQNKHELLNLKGSDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPNMPFKPGCSSDVVINETGVLNNSGLRGNQPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNRYSRIAS 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00013 1133 ProSiteProfiles PB1 domain profile. 1000 1083 IPR000270 GO:0005515
Vium1943g00013 1133 FunFam Auxin response factor 125 229 - -
Vium1943g00013 1133 Pfam AUX/IAA family 998 1086 IPR033389 -
Vium1943g00013 1133 SMART B3_2 127 229 IPR003340 GO:0003677
Vium1943g00013 1133 Gene3D - 996 1088 - -
Vium1943g00013 1133 Coils Coil 495 518 - -
Vium1943g00013 1133 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 1088 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium1943g00013 1133 FunFam Auxin response factor 290 362 - -
Vium1943g00013 1133 MobiDBLite consensus disorder prediction 717 740 - -
Vium1943g00013 1133 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vium1943g00013 1133 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Vium1943g00013 1133 MobiDBLite consensus disorder prediction 759 810 - -
Vium1943g00013 1133 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium1943g00013 1133 Coils Coil 628 651 - -
Vium1943g00013 1133 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vium1943g00013 1133 SUPERFAMILY CAD & PB1 domains 1013 1078 - -
Vium1943g00013 1133 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vium1943g00013 1133 Gene3D - 290 361 - -
Vium1943g00013 1133 Gene3D - 124 228 IPR015300 -
Vium1943g00013 1133 FunFam Auxin response factor 995 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00013 Vium-Chr1943 52500 59398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00013 1 488 B3 DNA Binding Superfamily AT1G19220 82.992 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium1943g00013 AUX_IAA 4.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00013 K14486 - gmx:100816054 1692.94