Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1943g00011 ATGAAGGTTCCATCCAATGGTTTCTTGCCTAATTCTGGCGAAGGGGAAAGGAAGCCGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTCTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTGTACTTCCCCCAAGGACACAGCGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGACTTCATTCCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGGCAGCCTACTGAGTTCTTCTGCAAAACACTTACAGCTAGTGACACCAGCACTCATGGTGGATTCTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTTTGGATTATTCAATGCAGCCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCATGATAATACATGGCCATTTAGACATATTTATAGAGGACAACCAAAGAGGCATCTATTAACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGCTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAACCAGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTACAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAATCTGGAGTACGCAGATATATGGGGACAATAACTGGGATCAGCGACTTGGATCCTGTACGATGGAAGAACTCACAATGGCGAAACATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCCAGTAGAGTTTCAATTTGGGAAATTGAACCAGTAGTTACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGAAGAATCGGATATGGAAAATGCTTTCAAGAGAGGTATGCCCTGGCTTGGAGAGGAGTTTGGCATGAAGGATGCCTCTAGTTCAATCTTTCCTGGTTTTAGTTTAGTTCAGTGGATGAGCATGCAACCGAATAATCAGCTCTCAGCGGCTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACTCTTCAGGGTAACCTTGGCACCGAAGACCCATCCAAGTTATTGAGCTTTCAACCTCCTGTTCTCTCTTCCCCAACTCTTCAATTAAACAAAACCAATCTGCCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAGCAACAGCAGCAGCTACAGCAACAACAACAGCTGCAGCAGCAGCAACTACAGTCATTGTTGCAAATACCAATGAACCATCTCCAGCAACAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGCCATTGCTGCAGCAAATGCCTCAACAGCTAGGACAGCAGCCCCAGAAACCGCAACAGCCAAGTCAGCATGCTACTCTTACGAATAATGGGGTAGTTTCTTCTAACCAGATTACAGGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAGCAACAATTACTCTCAGGAGGTATCCAAACCCAGCAAGGTATCCAATCAGCTAGTAAGAATACGTTCCCATTGACATCCTTACCACATGACTCGCAATTTCAGCAACAGTTAGACCAGCAAGCTAACCTACTGAGGCAACAACAGCAACAACAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGATTGCATCACAACAACAACCGCCTGCTACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAGTTGCTACAGAAATTGCAGCACCAACAACAGCAACTTCTTTCTACGTCCACCCCACTATTGCAGTCTCAGCTTCTACCGCAACAAAATCCTCACCAACAAAACCAGCAATTACCACTGCCCCCACCACCTATATCACATCATCAGCCTCAACAGCTTGCCAATAATGTATGTTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAACAGAATCCTATGAGCCAATCCCAGAATACACAGAAATCACTTACCACCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCGGCCCCATTAGGGGGGAGTTTGATGGTTGAGCCCACTAGTAATCTGTTACAGGATCTTCACAGTAAGCCTGACATGCAGAACAAACATGAGTTGCTCAATCTAAAAGGATCTGACCAGTTGAAGTATAAAGGGGCAATCACCGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACCATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGACTGCCAAACATGCCTTTCAAGCCCGGTTGCTCAAGTGATGTTGTCATCAACGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGGCAACCAACCTCCACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCTCATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCTAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTACAGCAGAATAGCCAGCTAG 3399 0.4501 MKVPSNGFLPNSGEGERKPINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDEESDMENAFKRGMPWLGEEFGMKDASSSIFPGFSLVQWMSMQPNNQLSAAQSGCFPSMLPSNTLQGNLGTEDPSKLLSFQPPVLSSPTLQLNKTNLPNQINQLQQSPVSWPQQQQLQQQQQQLQQQQQLQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQMPQQLGQQPQKPQQPSQHATLTNNGVVSSNQITGQFVQPPMAYGQLQQQQLLSGGIQTQQGIQSASKNTFPLTSLPHDSQFQQQLDQQANLLRQQQQQQQQTQLQQSPLQLLQQNLPQIASQQQPPATQMLQQNPSEQQLHLQLLQKLQHQQQQLLSTSTPLLQSQLLPQQNPHQQNQQLPLPPPPISHHQPQQLANNVCSTEKLLNSNNFSSSSLMQSQQNPMSQSQNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPAPLGGSLMVEPTSNLLQDLHSKPDMQNKHELLNLKGSDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGLPNMPFKPGCSSDVVINETGVLNNSGLRGNQPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNRYSRIAS 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1943g00011 1132 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vium1943g00011 1132 SMART B3_2 126 228 IPR003340 GO:0003677
Vium1943g00011 1132 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vium1943g00011 1132 MobiDBLite consensus disorder prediction 716 739 - -
Vium1943g00011 1132 FunFam Auxin response factor 994 1087 - -
Vium1943g00011 1132 MobiDBLite consensus disorder prediction 758 809 - -
Vium1943g00011 1132 Coils Coil 627 650 - -
Vium1943g00011 1132 Gene3D - 995 1087 - -
Vium1943g00011 1132 FunFam Auxin response factor 124 228 - -
Vium1943g00011 1132 Coils Coil 494 517 - -
Vium1943g00011 1132 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1087 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium1943g00011 1132 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium1943g00011 1132 Gene3D - 289 360 - -
Vium1943g00011 1132 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vium1943g00011 1132 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vium1943g00011 1132 Gene3D - 123 227 IPR015300 -
Vium1943g00011 1132 FunFam Auxin response factor 289 361 - -
Vium1943g00011 1132 SUPERFAMILY CAD & PB1 domains 1012 1077 - -
Vium1943g00011 1132 ProSiteProfiles PB1 domain profile. 999 1082 IPR000270 GO:0005515
Vium1943g00011 1132 Pfam AUX/IAA family 997 1085 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1943g00011 Vium-Chr1943 52500 59398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1943g00011 1 487 B3 DNA Binding Superfamily AT1G19220 83.162 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium1943g00011 AUX_IAA 4.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1943g00011 K14486 - gmx:100816054 1697.56